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LOCUS DQ136328 753 bp DNA linear VRL 25-MAY-2006
DEFINITION HIV-1 isolate QC168 clone B from Kenya nonfunctional envelope
glycoprotein (env) gene, partial sequence
ACCESSION DQ136328
VERSION DQ136328.1 GI:73334820
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 753)
Show all sequences for reference 1
AUTHORS Sagar,M., Kirkegaard,E., Lavreys,L. and Overbaugh,J.
TITLE Diversity in HIV-1 Envelope V1-V3 Sequences Early in Infection
Reflects Sequence Diversity Throughout the HIV-1 Genome But Does
Not Predict the Extent of Sequence Diversity During Chronic
Infection
JOURNAL AIDS Res. Hum. Retroviruses 22 (5), 430-437 (2006)
PUBMED 16706620
REFERENCE 2 (bases 1 to 753)
Show all sequences for reference 2
AUTHORS Sagar,M., Kirkegaard,E., Lavreys,L. and Overbaugh,J.
TITLE Direct Submission
JOURNAL Submitted (19-JUL-2005) Division of Human Biology, Fred Hutchinson
Cancer Research Center, 1100 Fairview Avenue North C3-168, Seattle,
WA 98109, USA
REFERENCE 3
Show all sequences for reference 3
AUTHORS Sagar,M., Wu,X., Lee,S. and Overbaugh,J.
TITLE Human immunodeficiency virus type 1 V1-V2 envelope loop sequences
expand and add glycosylation sites over the course of infection,
and these modifications affect antibody neutralization sensitivity.
JOURNAL J. Virol. 80 (19), 9586-98 (2006)
PUBMED 16973562
FEATURES Location/Qualifiers
source 1..753
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="QC168"
/isolation_source="peripheral blood monomuclear cells 950
days after infection"
/db_xref="taxon:11676"
/clone="B"
/country="Kenya"
gene <1..>753
/gene="env"
misc_feature <1..>753
/gene="env"
/note="nonfunctional envelope glycoprotein due to
mutation"
BASE COUNT 291 a 138 c 142 g 182 t
ORIGIN
1 gcctaaagcc atgtgtaaag ttaacccctc tctgcgttac tttaattgta ccaatgtgaa
61 caacaacact accaatgtga acaacaacac ggggtgggac gaagaaagaa aaaactgctc
121 tttcaatgta accacagagc taagggataa gagacagaag gtatattcac ttttttataa
181 acttgatgta gtacaaattg ataatagtag ttatagatta ataaattgta atacctcagc
241 cattacacag gcttgcccaa aggtaacctt tgagccaatt cccatacatt attgtgcccc
301 agctggtttt gcgatcctaa aatgtaagga tgagaagttc aatggaacag ggccatgcaa
361 gaatgtcagc acagtacaat gcacacatgg aatcaagcca gtagtatcaa ctcaactgct
421 gttaaatggc agtctagcag aaaaagaggt aatgattaga tctgaaaatt tcacaaacaa
481 tgccaaaaac atactagtac aatttaaaga gcctgtaaaa attaattgta ccagacctga
541 caacaataca agaacaagta tacgtatagg accaggacaa gcattctatg caacaggtat
601 aataggggat ataagacaag catattgtac tgtcaatgga tcagaatgga ataaagcgtt
661 acaaaaggta gttgaacaat taagaagctc cttcgagaac aaaacaataa tatttgctaa
721 ctcctcagga ggggatctag aaatttacca aca
//
last modified: Tue May 31 10:56 2022