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LOCUS	    AY998516		     590 bp    RNA     linear	VRL 27-APR-2005
DEFINITION  HIV-1 isolate L3082 from Libya reverse transcriptase (pol) gene,
	    partial cds
ACCESSION   AY998516
VERSION     AY998516.1 GI:62865808
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 590)
            Show all sequences for reference 1
  AUTHORS   Yerly,S., Quadri,R., Negro,F., Barbe,K.P., Cheseaux,J.J.,
	    Burgisser,P., Siegrist,C.A. and Perrin,L.
  TITLE     Nosocomial outbreak of multiple bloodborne viral infections
  JOURNAL   J. Infect. Dis. 184 (3), 369-372 (2001)
  PUBMED    11443566
REFERENCE   2 (bases 1 to 590)
            Show all sequences for reference 2
  AUTHORS   Yerly,S., Quadri,R., Negro,F., Barbe,K.P., Cheseaux,J.J.,
	    Burgisser,P., Siegrist,C.A. and Perrin,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2005) Geneva University Hospital, Laboratory of
	    Virology, 24 Micheli-Du-Crest, Geneva 14 1211, Switzerland
FEATURES             Location/Qualifiers
     source	     1..590
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="L3082"
		     /db_xref="taxon:11676"
		     /country="Libya"
     gene	     <1..>590
		     /gene="pol"
     CDS	     <1..>590
		     /gene="pol"
		     /note="RT"
		     /codon_start="1"
		     /transl_table="1"
		     /product="reverse transcriptase"
		     /protein_id="AAY17097.1"
		     /db_xref="GI:62865809"
		     /translation="EKIKALTDICTEMEKEGKISKIGPENPYNTPIFAIKKKDSTKWR
		     KLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTAF
		     TXPSVNNETPGIRYQYNVLPQGWKGSPAIFQASMIKILEPFRTKNPEMVIYQYMDDLY
		     VGSDLEIGQHRAKIDELRDHLLRWGFTTPDKKHQKEP"
BASE COUNT	245 a	  91 c	  119 g    134 t      1 other
ORIGIN
       1 gaaaaaataa aagcattaac agacatttgt acagagatgg aaaaggaagg aaaaatttca 
      61 aaaattgggc ctgaaaatcc atacaatact ccaatatttg ccataaagaa aaaagatagt 
     121 actaaatgga gaaaattagt agatttcaga gaactcaata agagaactca agacttctgg 
     181 gaggtccaat taggaatacc acatcccgcg ggattaaaaa agaaaaaatc agtaacagta 
     241 ctggatgtgg gggatgcata tttttcagtc cccttagata aagactttag aaagtatacg 
     301 gcattcacta wacctagtgt aaataatgag acaccaggga ttagatatca gtacaatgta 
     361 cttccacagg gatggaaagg atcaccagca atatttcagg caagtatgat aaaaatctta 
     421 gagcccttta gaacaaaaaa tccagagatg gtgatctacc aatatatgga tgatttatat 
     481 gtaggatctg acttagagat agggcagcat agagcaaaaa tagatgagtt aagagatcat 
     541 ctactgagat ggggatttac cacaccagac aaaaaacatc agaaagaacc 
//
last modified: Tue May 31 10:56 2022


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