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LOCUS AY998516 590 bp RNA linear VRL 27-APR-2005
DEFINITION HIV-1 isolate L3082 from Libya reverse transcriptase (pol) gene,
partial cds
ACCESSION AY998516
VERSION AY998516.1 GI:62865808
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 590)
Show all sequences for reference 1
AUTHORS Yerly,S., Quadri,R., Negro,F., Barbe,K.P., Cheseaux,J.J.,
Burgisser,P., Siegrist,C.A. and Perrin,L.
TITLE Nosocomial outbreak of multiple bloodborne viral infections
JOURNAL J. Infect. Dis. 184 (3), 369-372 (2001)
PUBMED 11443566
REFERENCE 2 (bases 1 to 590)
Show all sequences for reference 2
AUTHORS Yerly,S., Quadri,R., Negro,F., Barbe,K.P., Cheseaux,J.J.,
Burgisser,P., Siegrist,C.A. and Perrin,L.
TITLE Direct Submission
JOURNAL Submitted (04-APR-2005) Geneva University Hospital, Laboratory of
Virology, 24 Micheli-Du-Crest, Geneva 14 1211, Switzerland
FEATURES Location/Qualifiers
source 1..590
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="L3082"
/db_xref="taxon:11676"
/country="Libya"
gene <1..>590
/gene="pol"
CDS <1..>590
/gene="pol"
/note="RT"
/codon_start="1"
/transl_table="1"
/product="reverse transcriptase"
/protein_id="AAY17097.1"
/db_xref="GI:62865809"
/translation="EKIKALTDICTEMEKEGKISKIGPENPYNTPIFAIKKKDSTKWR
KLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTAF
TXPSVNNETPGIRYQYNVLPQGWKGSPAIFQASMIKILEPFRTKNPEMVIYQYMDDLY
VGSDLEIGQHRAKIDELRDHLLRWGFTTPDKKHQKEP"
BASE COUNT 245 a 91 c 119 g 134 t 1 other
ORIGIN
1 gaaaaaataa aagcattaac agacatttgt acagagatgg aaaaggaagg aaaaatttca
61 aaaattgggc ctgaaaatcc atacaatact ccaatatttg ccataaagaa aaaagatagt
121 actaaatgga gaaaattagt agatttcaga gaactcaata agagaactca agacttctgg
181 gaggtccaat taggaatacc acatcccgcg ggattaaaaa agaaaaaatc agtaacagta
241 ctggatgtgg gggatgcata tttttcagtc cccttagata aagactttag aaagtatacg
301 gcattcacta wacctagtgt aaataatgag acaccaggga ttagatatca gtacaatgta
361 cttccacagg gatggaaagg atcaccagca atatttcagg caagtatgat aaaaatctta
421 gagcccttta gaacaaaaaa tccagagatg gtgatctacc aatatatgga tgatttatat
481 gtaggatctg acttagagat agggcagcat agagcaaaaa tagatgagtt aagagatcat
541 ctactgagat ggggatttac cacaccagac aaaaaacatc agaaagaacc
//
last modified: Tue May 31 10:56 2022