View NCBI entry Download GenBank file Graphics View Download GFF3 File
LOCUS AY998353 627 bp RNA linear VRL 19-SEP-2005
DEFINITION HIV-1 isolate 13_BM_L from Zimbabwe reverse transcriptase (pol)
gene, partial cds
ACCESSION AY998353
VERSION AY998353.1 GI:66363611
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 627)
Show all sequences for reference 1
AUTHORS Lee,E.J., Kantor,R., Zijenah,L., Sheldon,W., Emel,L., Mateta,P.,
Johnston,E., Wells,J., Shetty,A.K., Coovadia,H., Maldonado,Y.,
Jones,S.A., Mofenson,L.M., Contag,C.H., Bassett,M. and
Katzenstein,D.A.
CONSRTM HIVNET 023 Study Team
TITLE Breast-Milk Shedding of Drug-Resistant HIV-1 Subtype C in Women
Exposed to Single-Dose Nevirapine
JOURNAL J. Infect. Dis. 192 (7), 1260-1264 (2005)
PUBMED 16136470
REFERENCE 2 (bases 1 to 627)
Show all sequences for reference 2
AUTHORS Lee,E.J., Kantor,R., Zijenah,L., Sheldon,W., Emel,L., Mateta,P.,
Johnston,E., Wells,J., Shetty,A., Coovadia,H., Maldonado,Y.,
Jones,S.A., Mofenson,L.M., Contag,C., Basset,M. and
Katzenstein,D.A.
CONSRTM HIVNET 023 Study Team
TITLE Direct Submission
JOURNAL Submitted (04-APR-2005) Infectious Diseases, Stanford University,
300 Pasteur Drive, S-169, Stanford, CA 94305, USA
REFERENCE 3
Show all sequences for reference 3
AUTHORS Kassaye,S., Lee,E., Kantor,R., Johnston,E., Winters,M., Zijenah,L.,
Mateta,P. and Katzenstein,D.
TITLE Drug Resistance in Plasma and Breast Milk after Single-Dose
Nevirapine in Subtype C HIV Type 1: Population and Clonal Sequence
Analysis
JOURNAL AIDS Res. Hum. Retroviruses 23 (8), 1055-1061 (2007)
PUBMED 17725424
COMMENT Sample 8 weeks post-treatment.
FEATURES Location/Qualifiers
source 1..627
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="13_BM_L"
/isolation_source="breast milk from left breast"
/db_xref="taxon:11676"
/country="Zimbabwe"
gene <1..>627
/gene="pol"
CDS <1..>627
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="reverse transcriptase"
/protein_id="AAY45822.1"
/db_xref="GI:66363612"
/translation="CEEMEKEGKITKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELN
KRTQDFWEVQLGIPHPAGLKKXKSVTVLDVGDAYFSVPLDENFXKYTAFTIPSINNAT
PGTRYQYNVLPQGWKGSPAIFQSSMTKILEPFRMKNPDLVIYQYMDDLYVGSDLEIGX
HRAKVEELREHLLKWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQTIQL"
BASE COUNT 239 a 106 c 132 g 143 t 7 other
ORIGIN
1 tgtgaagaaa tggaraagga aggaaaaatt acaaaaattg ggcctgaaaa tccatataac
61 actccagtat ttgccataaa aaagaaggac agtactaagt ggagaaaatt agtagatttc
121 agggaactca ataaaagaac tcaagacttt tgggaagttc aattagggat accacaccca
181 gcggggttaa aaaagaamaa atcagtgaca gtgctggatg tgggggatgc atatttttca
241 gttcctttag atgaaaactt cagsaaatat actgcattca ccatacctag tataaacaat
301 gcaacrccag gaacyagata tcaatataat gtgcttccac agggatggaa aggatcacca
361 gcaatattcc agagtagcat gacaaaaatc ttagagccct ttcggatgaa aaacccagac
421 ttggttatct atcaatatat ggatgacctg tatgtaggat ctgacttaga aatagggcra
481 catagagcaa aagtagagga gttaagagaa catttattga aatggggact tacyacacca
541 gacaagaaac atcagaaaga acccccattt ctttggatgg ggtatgaact ccatcctgac
601 aaatggacag tacagactat acagctg
//
last modified: Tue May 31 10:56 2022