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LOCUS	    AY998353		     627 bp    RNA     linear	VRL 19-SEP-2005
DEFINITION  HIV-1 isolate 13_BM_L from Zimbabwe reverse transcriptase (pol)
	    gene, partial cds
ACCESSION   AY998353
VERSION     AY998353.1 GI:66363611
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 627)
            Show all sequences for reference 1
  AUTHORS   Lee,E.J., Kantor,R., Zijenah,L., Sheldon,W., Emel,L., Mateta,P.,
	    Johnston,E., Wells,J., Shetty,A.K., Coovadia,H., Maldonado,Y.,
	    Jones,S.A., Mofenson,L.M., Contag,C.H., Bassett,M. and
	    Katzenstein,D.A.
  CONSRTM   HIVNET 023 Study Team
  TITLE     Breast-Milk Shedding of Drug-Resistant HIV-1 Subtype C in Women
	    Exposed to Single-Dose Nevirapine
  JOURNAL   J. Infect. Dis. 192 (7), 1260-1264 (2005)
  PUBMED    16136470
REFERENCE   2 (bases 1 to 627)
            Show all sequences for reference 2
  AUTHORS   Lee,E.J., Kantor,R., Zijenah,L., Sheldon,W., Emel,L., Mateta,P.,
	    Johnston,E., Wells,J., Shetty,A., Coovadia,H., Maldonado,Y.,
	    Jones,S.A., Mofenson,L.M., Contag,C., Basset,M. and
	    Katzenstein,D.A.
  CONSRTM   HIVNET 023 Study Team
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2005) Infectious Diseases, Stanford University,
	    300 Pasteur Drive, S-169, Stanford, CA 94305, USA
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Kassaye,S., Lee,E., Kantor,R., Johnston,E., Winters,M., Zijenah,L.,
	    Mateta,P. and Katzenstein,D.
  TITLE     Drug Resistance in Plasma and Breast Milk after Single-Dose
	    Nevirapine in Subtype C HIV Type 1: Population and Clonal Sequence
	    Analysis
  JOURNAL   AIDS Res. Hum. Retroviruses 23 (8), 1055-1061 (2007)
  PUBMED    17725424
COMMENT     Sample 8 weeks post-treatment.
FEATURES             Location/Qualifiers
     source	     1..627
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="13_BM_L"
		     /isolation_source="breast milk from left breast"
		     /db_xref="taxon:11676"
		     /country="Zimbabwe"
     gene	     <1..>627
		     /gene="pol"
     CDS	     <1..>627
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="reverse transcriptase"
		     /protein_id="AAY45822.1"
		     /db_xref="GI:66363612"
		     /translation="CEEMEKEGKITKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELN
		     KRTQDFWEVQLGIPHPAGLKKXKSVTVLDVGDAYFSVPLDENFXKYTAFTIPSINNAT
		     PGTRYQYNVLPQGWKGSPAIFQSSMTKILEPFRMKNPDLVIYQYMDDLYVGSDLEIGX
		     HRAKVEELREHLLKWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQTIQL"
BASE COUNT	239 a	 106 c	  132 g    143 t      7 other
ORIGIN
       1 tgtgaagaaa tggaraagga aggaaaaatt acaaaaattg ggcctgaaaa tccatataac 
      61 actccagtat ttgccataaa aaagaaggac agtactaagt ggagaaaatt agtagatttc 
     121 agggaactca ataaaagaac tcaagacttt tgggaagttc aattagggat accacaccca 
     181 gcggggttaa aaaagaamaa atcagtgaca gtgctggatg tgggggatgc atatttttca 
     241 gttcctttag atgaaaactt cagsaaatat actgcattca ccatacctag tataaacaat 
     301 gcaacrccag gaacyagata tcaatataat gtgcttccac agggatggaa aggatcacca 
     361 gcaatattcc agagtagcat gacaaaaatc ttagagccct ttcggatgaa aaacccagac 
     421 ttggttatct atcaatatat ggatgacctg tatgtaggat ctgacttaga aatagggcra 
     481 catagagcaa aagtagagga gttaagagaa catttattga aatggggact tacyacacca 
     541 gacaagaaac atcagaaaga acccccattt ctttggatgg ggtatgaact ccatcctgac 
     601 aaatggacag tacagactat acagctg
//
last modified: Tue May 31 10:56 2022


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