View NCBI entry Download GenBank file Graphics View Download GFF3 File
LOCUS AY998337 630 bp RNA linear VRL 19-SEP-2005
DEFINITION HIV-1 isolate 2_BM_L from Zimbabwe reverse transcriptase (pol)
gene, partial cds
ACCESSION AY998337
VERSION AY998337.1 GI:66363579
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 630)
Show all sequences for reference 1
AUTHORS Lee,E.J., Kantor,R., Zijenah,L., Sheldon,W., Emel,L., Mateta,P.,
Johnston,E., Wells,J., Shetty,A.K., Coovadia,H., Maldonado,Y.,
Jones,S.A., Mofenson,L.M., Contag,C.H., Bassett,M. and
Katzenstein,D.A.
CONSRTM HIVNET 023 Study Team
TITLE Breast-Milk Shedding of Drug-Resistant HIV-1 Subtype C in Women
Exposed to Single-Dose Nevirapine
JOURNAL J. Infect. Dis. 192 (7), 1260-1264 (2005)
PUBMED 16136470
REFERENCE 2 (bases 1 to 630)
Show all sequences for reference 2
AUTHORS Lee,E.J., Kantor,R., Zijenah,L., Sheldon,W., Emel,L., Mateta,P.,
Johnston,E., Wells,J., Shetty,A., Coovadia,H., Maldonado,Y.,
Jones,S.A., Mofenson,L.M., Contag,C., Basset,M. and
Katzenstein,D.A.
CONSRTM HIVNET 023 Study Team
TITLE Direct Submission
JOURNAL Submitted (04-APR-2005) Infectious Diseases, Stanford University,
300 Pasteur Drive, S-169, Stanford, CA 94305, USA
REFERENCE 3
Show all sequences for reference 3
AUTHORS Kassaye,S., Lee,E., Kantor,R., Johnston,E., Winters,M., Zijenah,L.,
Mateta,P. and Katzenstein,D.
TITLE Drug Resistance in Plasma and Breast Milk after Single-Dose
Nevirapine in Subtype C HIV Type 1: Population and Clonal Sequence
Analysis
JOURNAL AIDS Res. Hum. Retroviruses 23 (8), 1055-1061 (2007)
PUBMED 17725424
COMMENT Sample 8 weeks post-treatment.
FEATURES Location/Qualifiers
source 1..630
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="2_BM_L"
/isolation_source="breast milk from left breast"
/db_xref="taxon:11676"
/country="Zimbabwe"
gene <1..>630
/gene="pol"
CDS <1..>630
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="reverse transcriptase"
/protein_id="AAY45806.1"
/db_xref="GI:66363580"
/translation="CEEMEKEGKITKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELN
KRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDENFRKYTAFTIPSINNET
PGIRYQYNVLPQGWKGSPAIFQSSMTRILEPFRAQNPEIVIYQYMDDLYVGSDLEIGQ
HRTKIEXLREHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLP"
BASE COUNT 244 a 106 c 128 g 142 t 10 other
ORIGIN
1 tgtgaagaaa tggagaagga aggaaaaatt acaaaaattg ggcctgaaaa tccatataat
61 actccagtat ttgccataaa aaagaaggac agtactaagt ggagaaaatt agtagatttc
121 agggaactaa ataaaagaac tcaagatttt tgggaagttc aattaggaat accacaccca
181 gcagggttaa aaaagaaaaa atcagtgaca gtcctggatg tgggrgatgc atatttttca
241 gttcctttag atgaaaactt caggaaatat actgcattca ccatmcckag tataaacaat
301 gaaacaccag ggatcagata ccaatataat gtgcttccac agggatggaa aggatcacca
361 gcsatattcc agagtagcat gacaagaatc ttagagccct ttagggcaca aaayccagaa
421 atagtcatct aycaatatat ggatgayttg tatgtaggat ctgacttaga aatagggcaa
481 catagaacaa aaatagagra gttaagagaa catctattaa ggtggggrtt taccacacca
541 gataagaaac atcaaaaaga rcccccattt ctttggatgg ggtatgaact ccatcctgac
601 aaatggaccg tacagcctat acagctgcca
//
last modified: Tue May 31 10:56 2022