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LOCUS	    AY998337		     630 bp    RNA     linear	VRL 19-SEP-2005
DEFINITION  HIV-1 isolate 2_BM_L from Zimbabwe reverse transcriptase (pol)
	    gene, partial cds
ACCESSION   AY998337
VERSION     AY998337.1 GI:66363579
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 630)
            Show all sequences for reference 1
  AUTHORS   Lee,E.J., Kantor,R., Zijenah,L., Sheldon,W., Emel,L., Mateta,P.,
	    Johnston,E., Wells,J., Shetty,A.K., Coovadia,H., Maldonado,Y.,
	    Jones,S.A., Mofenson,L.M., Contag,C.H., Bassett,M. and
	    Katzenstein,D.A.
  CONSRTM   HIVNET 023 Study Team
  TITLE     Breast-Milk Shedding of Drug-Resistant HIV-1 Subtype C in Women
	    Exposed to Single-Dose Nevirapine
  JOURNAL   J. Infect. Dis. 192 (7), 1260-1264 (2005)
  PUBMED    16136470
REFERENCE   2 (bases 1 to 630)
            Show all sequences for reference 2
  AUTHORS   Lee,E.J., Kantor,R., Zijenah,L., Sheldon,W., Emel,L., Mateta,P.,
	    Johnston,E., Wells,J., Shetty,A., Coovadia,H., Maldonado,Y.,
	    Jones,S.A., Mofenson,L.M., Contag,C., Basset,M. and
	    Katzenstein,D.A.
  CONSRTM   HIVNET 023 Study Team
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2005) Infectious Diseases, Stanford University,
	    300 Pasteur Drive, S-169, Stanford, CA 94305, USA
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Kassaye,S., Lee,E., Kantor,R., Johnston,E., Winters,M., Zijenah,L.,
	    Mateta,P. and Katzenstein,D.
  TITLE     Drug Resistance in Plasma and Breast Milk after Single-Dose
	    Nevirapine in Subtype C HIV Type 1: Population and Clonal Sequence
	    Analysis
  JOURNAL   AIDS Res. Hum. Retroviruses 23 (8), 1055-1061 (2007)
  PUBMED    17725424
COMMENT     Sample 8 weeks post-treatment.
FEATURES             Location/Qualifiers
     source	     1..630
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="2_BM_L"
		     /isolation_source="breast milk from left breast"
		     /db_xref="taxon:11676"
		     /country="Zimbabwe"
     gene	     <1..>630
		     /gene="pol"
     CDS	     <1..>630
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="reverse transcriptase"
		     /protein_id="AAY45806.1"
		     /db_xref="GI:66363580"
		     /translation="CEEMEKEGKITKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELN
		     KRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDENFRKYTAFTIPSINNET
		     PGIRYQYNVLPQGWKGSPAIFQSSMTRILEPFRAQNPEIVIYQYMDDLYVGSDLEIGQ
		     HRTKIEXLREHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLP"
BASE COUNT	244 a	 106 c	  128 g    142 t     10 other
ORIGIN
       1 tgtgaagaaa tggagaagga aggaaaaatt acaaaaattg ggcctgaaaa tccatataat 
      61 actccagtat ttgccataaa aaagaaggac agtactaagt ggagaaaatt agtagatttc 
     121 agggaactaa ataaaagaac tcaagatttt tgggaagttc aattaggaat accacaccca 
     181 gcagggttaa aaaagaaaaa atcagtgaca gtcctggatg tgggrgatgc atatttttca 
     241 gttcctttag atgaaaactt caggaaatat actgcattca ccatmcckag tataaacaat 
     301 gaaacaccag ggatcagata ccaatataat gtgcttccac agggatggaa aggatcacca 
     361 gcsatattcc agagtagcat gacaagaatc ttagagccct ttagggcaca aaayccagaa 
     421 atagtcatct aycaatatat ggatgayttg tatgtaggat ctgacttaga aatagggcaa 
     481 catagaacaa aaatagagra gttaagagaa catctattaa ggtggggrtt taccacacca 
     541 gataagaaac atcaaaaaga rcccccattt ctttggatgg ggtatgaact ccatcctgac 
     601 aaatggaccg tacagcctat acagctgcca 
//
last modified: Tue May 31 10:56 2022


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