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LOCUS	    AY838569		    1494 bp    RNA     linear	VRL 25-JUL-2008
DEFINITION  HIV-1 isolate 1003M from South Africa gag protein (gag) gene,
	    partial cds
ACCESSION   AY838569
VERSION     AY838569.1 GI:56608666
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1494)
            Show all sequences for reference 1
  AUTHORS   Kiepiela,P., Leslie,A.J., Honeyborne,I., Ramduth,D., Thobakgale,C.,
	    Chetty,S., Rathnavalu,P., Moore,C., Pfafferott,K., Hilton,L.,
	    Zimbwa,P., Moore,S., Allen,T., Brander,C., Addo,M.M., Atfeld,M.,
	    James,I., Mallal,S., Bunce,M., Barber,L.D., Szinger,J., Day,C.,
	    Klenerman,P., Mullins,J., Korber,B., Coovadia,H.M., Walker,B.D. and
	    Goulder,P.J.R.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2004) Theoretical Biology and Biophysics, Los
	    Alamos National Laboratory, MS K710, Los Alamos, NM 87544, USA
REFERENCE   2
            Show all sequences for reference 2
  AUTHORS   Kiepiela,P., Leslie,A.J., Honeyborne,I., Ramduth,D., Thobakgale,C.,
	    Chetty,S., Rathnavalu,P., Moore,C., Pfafferott,K.J., Hilton,L.,
	    Zimbwa,P., Moore,S., Allen,T., Brander,C., Addo,M.M., Altfeld,M.,
	    James,I., Mallal,S., Bunce,M., Barber,L.D., Szinger,J., Day,C.,
	    Klenerman,P., Mullins,J., Korber,B., Coovadia,H.M., Walker,B.D. and
	    Goulder,P.J.
  TITLE     Dominant influence of HLA-B in mediating the potential co-evolution
	    of HIV and HLA
  JOURNAL   Nature 432 (7018), 769-775 (2004)
  PUBMED    15592417
FEATURES             Location/Qualifiers
     source	     1..1494
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="1003M"
		     /isolation_source="blood from heterosexual female patient
		     who attended prenatal clinic"
		     /db_xref="taxon:11676"
		     /country="South Africa: Durban"
		     /note="subtype: C"
     gene	     1..>1494
		     /gene="gag"
     CDS	     1..>1494
		     /gene="gag"
		     /codon_start="1"
		     /transl_table="1"
		     /product="gag protein"
		     /protein_id="AAW02967.1"
		     /db_xref="GI:56608667"
		     /translation="MGARASILRAGKLDKWEKIRLRPGGRKRYMLKHLVWASRELERF
		     ALNPGLLETSEGCKQIMQQLQPALQTGTEELKSLFNTVATLYCVHKDIEVRDTKEALD
		     KIEEEQNKSQQKTQQAKAADGKVSQNYPIVQNVQGQMVHQAISPRTLNAWVKVIEEKA
		     FSPEVIPMFTALSEGATPQDLNTMLNTVGGHQAAMQMLKDTINEEAAEWDRLHPVHAG
		     PVAPGQLREPRGSDIAGTTSTLQEQIAWMTNNPPVPVGDIYKRWIILGLNKIVRMYSP
		     VSILDIKQGPKEPFRDYVDRFFKVLRAEQATQDVKNWMTETLLVQNANPDCKTILRAL
		     GPAATLEEMMTACQGVGGPGHKARVLAEAMSQANSNILIQRSNFKGSKRIVKCFNCGK
		     EGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQNRPEP
		     LQNRIEPTAPPAESFKFEETTPAPKQESKDREPLTSLKSLFGSDPLSQ"
BASE COUNT	548 a	 296 c	  362 g    288 t
ORIGIN
       1 atgggtgcga gagcgtcaat attaagagcg ggaaaattag ataaatggga aaaaattagg 
      61 ttaaggccag ggggaaggaa aagatatatg ttaaaacact tagtatgggc aagcagggag 
     121 ctggaaagat ttgcacttaa ccctggcctt ttagaaacat cagaaggctg taaacaaata 
     181 atgcaacagc tacaaccagc tcttcagaca ggaacagagg aacttaaatc attattcaac 
     241 acagtagcaa ctctctattg tgtacataaa gacatagagg tacgagacac caaggaagcc 
     301 ttagacaaaa tagaggaaga acaaaacaaa agtcagcaaa aaacacagca ggcaaaagcg 
     361 gctgacggga aagtcagtca aaattatcct atagtgcaga atgtccaagg ccaaatggta 
     421 caccaggcca tatcacctag gactttgaat gcatgggtaa aagtaataga ggagaaggct 
     481 tttagcccag aggtaatacc catgttcaca gcattatcag aaggagccac cccacaagac 
     541 ttaaacacca tgttaaatac agtgggggga catcaagcag ccatgcagat gttaaaagat 
     601 accatcaatg aggaggctgc agaatgggat agattacatc cagtacatgc aggacctgtt 
     661 gcaccaggcc aactgaggga gcctagggga agtgacatag caggaactac tagtaccctt 
     721 caggaacaaa tagcatggat gacaaataac ccacctgtcc cagtgggaga catctataaa 
     781 agatggataa ttctggggtt aaataaaata gtaagaatgt atagccctgt cagcattttg 
     841 gacataaaac aagggccaaa ggaacccttt agagactatg tagaccggtt ctttaaggtc 
     901 ttaagagctg aacaagctac acaagatgta aaaaattgga tgacagaaac cttgttggtc 
     961 caaaatgcga acccagattg taagaccatt ttaagagcat taggaccagc ggctacatta 
    1021 gaagaaatga tgacagcatg tcagggagtg ggaggacctg gccacaaagc aagagtgttg 
    1081 gctgaggcaa tgagccaagc aaacagtaac atactgatac agagaagcaa ttttaaagga 
    1141 tctaaaagaa ttgttaaatg tttcaactgt ggcaaggaag ggcacatagc caaaaactgc 
    1201 agggccccta ggaaaaaagg ctgttggaaa tgtggaaagg aaggacacca aatgaaagac 
    1261 tgtactgaga ggcaggctaa ttttttaggg aaaatttggc cttcccacaa ggggaggcca 
    1321 gggaatttcc ttcagaacag accagagccc cttcagaaca gaatagagcc aacagcccca 
    1381 ccagcagaga gcttcaagtt cgaggagaca acccccgctc cgaagcagga gtcgaaagac 
    1441 agggaaccct taacttccct caaatcactc tttggcagcg accccttgtc tcaa
//
last modified: Tue May 31 10:56 2022


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