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LOCUS AY838569 1494 bp RNA linear VRL 25-JUL-2008
DEFINITION HIV-1 isolate 1003M from South Africa gag protein (gag) gene,
partial cds
ACCESSION AY838569
VERSION AY838569.1 GI:56608666
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1494)
Show all sequences for reference 1
AUTHORS Kiepiela,P., Leslie,A.J., Honeyborne,I., Ramduth,D., Thobakgale,C.,
Chetty,S., Rathnavalu,P., Moore,C., Pfafferott,K., Hilton,L.,
Zimbwa,P., Moore,S., Allen,T., Brander,C., Addo,M.M., Atfeld,M.,
James,I., Mallal,S., Bunce,M., Barber,L.D., Szinger,J., Day,C.,
Klenerman,P., Mullins,J., Korber,B., Coovadia,H.M., Walker,B.D. and
Goulder,P.J.R.
TITLE Direct Submission
JOURNAL Submitted (26-NOV-2004) Theoretical Biology and Biophysics, Los
Alamos National Laboratory, MS K710, Los Alamos, NM 87544, USA
REFERENCE 2
Show all sequences for reference 2
AUTHORS Kiepiela,P., Leslie,A.J., Honeyborne,I., Ramduth,D., Thobakgale,C.,
Chetty,S., Rathnavalu,P., Moore,C., Pfafferott,K.J., Hilton,L.,
Zimbwa,P., Moore,S., Allen,T., Brander,C., Addo,M.M., Altfeld,M.,
James,I., Mallal,S., Bunce,M., Barber,L.D., Szinger,J., Day,C.,
Klenerman,P., Mullins,J., Korber,B., Coovadia,H.M., Walker,B.D. and
Goulder,P.J.
TITLE Dominant influence of HLA-B in mediating the potential co-evolution
of HIV and HLA
JOURNAL Nature 432 (7018), 769-775 (2004)
PUBMED 15592417
FEATURES Location/Qualifiers
source 1..1494
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="1003M"
/isolation_source="blood from heterosexual female patient
who attended prenatal clinic"
/db_xref="taxon:11676"
/country="South Africa: Durban"
/note="subtype: C"
gene 1..>1494
/gene="gag"
CDS 1..>1494
/gene="gag"
/codon_start="1"
/transl_table="1"
/product="gag protein"
/protein_id="AAW02967.1"
/db_xref="GI:56608667"
/translation="MGARASILRAGKLDKWEKIRLRPGGRKRYMLKHLVWASRELERF
ALNPGLLETSEGCKQIMQQLQPALQTGTEELKSLFNTVATLYCVHKDIEVRDTKEALD
KIEEEQNKSQQKTQQAKAADGKVSQNYPIVQNVQGQMVHQAISPRTLNAWVKVIEEKA
FSPEVIPMFTALSEGATPQDLNTMLNTVGGHQAAMQMLKDTINEEAAEWDRLHPVHAG
PVAPGQLREPRGSDIAGTTSTLQEQIAWMTNNPPVPVGDIYKRWIILGLNKIVRMYSP
VSILDIKQGPKEPFRDYVDRFFKVLRAEQATQDVKNWMTETLLVQNANPDCKTILRAL
GPAATLEEMMTACQGVGGPGHKARVLAEAMSQANSNILIQRSNFKGSKRIVKCFNCGK
EGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQNRPEP
LQNRIEPTAPPAESFKFEETTPAPKQESKDREPLTSLKSLFGSDPLSQ"
BASE COUNT 548 a 296 c 362 g 288 t
ORIGIN
1 atgggtgcga gagcgtcaat attaagagcg ggaaaattag ataaatggga aaaaattagg
61 ttaaggccag ggggaaggaa aagatatatg ttaaaacact tagtatgggc aagcagggag
121 ctggaaagat ttgcacttaa ccctggcctt ttagaaacat cagaaggctg taaacaaata
181 atgcaacagc tacaaccagc tcttcagaca ggaacagagg aacttaaatc attattcaac
241 acagtagcaa ctctctattg tgtacataaa gacatagagg tacgagacac caaggaagcc
301 ttagacaaaa tagaggaaga acaaaacaaa agtcagcaaa aaacacagca ggcaaaagcg
361 gctgacggga aagtcagtca aaattatcct atagtgcaga atgtccaagg ccaaatggta
421 caccaggcca tatcacctag gactttgaat gcatgggtaa aagtaataga ggagaaggct
481 tttagcccag aggtaatacc catgttcaca gcattatcag aaggagccac cccacaagac
541 ttaaacacca tgttaaatac agtgggggga catcaagcag ccatgcagat gttaaaagat
601 accatcaatg aggaggctgc agaatgggat agattacatc cagtacatgc aggacctgtt
661 gcaccaggcc aactgaggga gcctagggga agtgacatag caggaactac tagtaccctt
721 caggaacaaa tagcatggat gacaaataac ccacctgtcc cagtgggaga catctataaa
781 agatggataa ttctggggtt aaataaaata gtaagaatgt atagccctgt cagcattttg
841 gacataaaac aagggccaaa ggaacccttt agagactatg tagaccggtt ctttaaggtc
901 ttaagagctg aacaagctac acaagatgta aaaaattgga tgacagaaac cttgttggtc
961 caaaatgcga acccagattg taagaccatt ttaagagcat taggaccagc ggctacatta
1021 gaagaaatga tgacagcatg tcagggagtg ggaggacctg gccacaaagc aagagtgttg
1081 gctgaggcaa tgagccaagc aaacagtaac atactgatac agagaagcaa ttttaaagga
1141 tctaaaagaa ttgttaaatg tttcaactgt ggcaaggaag ggcacatagc caaaaactgc
1201 agggccccta ggaaaaaagg ctgttggaaa tgtggaaagg aaggacacca aatgaaagac
1261 tgtactgaga ggcaggctaa ttttttaggg aaaatttggc cttcccacaa ggggaggcca
1321 gggaatttcc ttcagaacag accagagccc cttcagaaca gaatagagcc aacagcccca
1381 ccagcagaga gcttcaagtt cgaggagaca acccccgctc cgaagcagga gtcgaaagac
1441 agggaaccct taacttccct caaatcactc tttggcagcg accccttgtc tcaa
//
last modified: Tue May 31 10:56 2022