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LOCUS	    AY823999		     360 bp    RNA     linear	VRL 03-MAY-2006
DEFINITION  HIV-1 isolate P24.1.2_000 from USA envelope glycoprotein (env)
	    gene, partial cds
ACCESSION   AY823999
VERSION     AY823999.1 GI:56124359
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 360)
            Show all sequences for reference 1
  AUTHORS   Edwards,C.T.T., Holmes,E.C., Wilson,D.J., Viscidi,R.P.,
	    Abrams,E.J., Phillips,R.E. and Drummond,A.J.
  TITLE     Population genetic estimation of the loss of genetic diversity
	    during horizontal transmission of HIV-1
  JOURNAL   BMC Evol. Biol. 6, 28 (2006)
  PUBMED    16556318
REFERENCE   2 (bases 1 to 360)
            Show all sequences for reference 2
  AUTHORS   Edwards,C.T., Viscidi,R.P. and Abrams,E.J.
  TITLE     Deterministic evolution of HIV-1 envelope is dominated by short
	    lived deleterious mutations
  JOURNAL   Unpublished
REFERENCE   3 (bases 1 to 360)
            Show all sequences for reference 3
  AUTHORS   Edwards,C.T., Viscidi,R.P. and Abrams,E.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-NOV-2004) Clinical Medicine, University of Oxford,
	    The Peter Medawar Building, Oxford OX1 3SY, UK
FEATURES             Location/Qualifiers
     source	     1..360
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="P24.1.2_000"
		     /db_xref="taxon:11676"
		     /country="USA: New York"
		     /note="cloned RNA sampled longitudinally from birth name
		     suffix represents days since first sample"
     gene	     <1..>360
		     /gene="env"
     CDS	     <1..>360
		     /gene="env"
		     /note="V3 region"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="AAV74626.1"
		     /db_xref="GI:56124360"
		     /translation="CTHGIRPVVSTQLLLNGSLAEEEVVIRSENFSNNAKNIIVQLNE
		     SVTINCTRPSNNTSKSIHFGPGKILYTTGRIIGDIRKAHCNISKEAWNNTLKQIVRKL
		     REQFENRTIVFDQPTGGD"
BASE COUNT	152 a	  52 c	   72 g     84 t
ORIGIN
       1 tgtacacatg gaattaggcc agtagtgtca actcaattgc tgttaaatgg cagtttagca 
      61 gaagaagagg tagtaattag atctgaaaat ttctcgaaca atgctaaaaa cataatagta 
     121 cagctgaatg aatctgtaac aattaattgt acaagaccca gcaacaatac aagcaaaagt 
     181 atacattttg gaccagggaa aatactttat acaacaggaa gaatcatagg agatataaga 
     241 aaagcacatt gtaacattag taaggaagca tggaataaca ctttaaaaca gatagttagg 
     301 aagttaagag aacaatttga gaacagaaca atagtctttg atcaacccac aggaggggac 
//
last modified: Tue May 31 10:56 2022


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