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LOCUS AY823999 360 bp RNA linear VRL 03-MAY-2006
DEFINITION HIV-1 isolate P24.1.2_000 from USA envelope glycoprotein (env)
gene, partial cds
ACCESSION AY823999
VERSION AY823999.1 GI:56124359
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 360)
Show all sequences for reference 1
AUTHORS Edwards,C.T.T., Holmes,E.C., Wilson,D.J., Viscidi,R.P.,
Abrams,E.J., Phillips,R.E. and Drummond,A.J.
TITLE Population genetic estimation of the loss of genetic diversity
during horizontal transmission of HIV-1
JOURNAL BMC Evol. Biol. 6, 28 (2006)
PUBMED 16556318
REFERENCE 2 (bases 1 to 360)
Show all sequences for reference 2
AUTHORS Edwards,C.T., Viscidi,R.P. and Abrams,E.J.
TITLE Deterministic evolution of HIV-1 envelope is dominated by short
lived deleterious mutations
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 360)
Show all sequences for reference 3
AUTHORS Edwards,C.T., Viscidi,R.P. and Abrams,E.J.
TITLE Direct Submission
JOURNAL Submitted (12-NOV-2004) Clinical Medicine, University of Oxford,
The Peter Medawar Building, Oxford OX1 3SY, UK
FEATURES Location/Qualifiers
source 1..360
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="P24.1.2_000"
/db_xref="taxon:11676"
/country="USA: New York"
/note="cloned RNA sampled longitudinally from birth name
suffix represents days since first sample"
gene <1..>360
/gene="env"
CDS <1..>360
/gene="env"
/note="V3 region"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="AAV74626.1"
/db_xref="GI:56124360"
/translation="CTHGIRPVVSTQLLLNGSLAEEEVVIRSENFSNNAKNIIVQLNE
SVTINCTRPSNNTSKSIHFGPGKILYTTGRIIGDIRKAHCNISKEAWNNTLKQIVRKL
REQFENRTIVFDQPTGGD"
BASE COUNT 152 a 52 c 72 g 84 t
ORIGIN
1 tgtacacatg gaattaggcc agtagtgtca actcaattgc tgttaaatgg cagtttagca
61 gaagaagagg tagtaattag atctgaaaat ttctcgaaca atgctaaaaa cataatagta
121 cagctgaatg aatctgtaac aattaattgt acaagaccca gcaacaatac aagcaaaagt
181 atacattttg gaccagggaa aatactttat acaacaggaa gaatcatagg agatataaga
241 aaagcacatt gtaacattag taaggaagca tggaataaca ctttaaaaca gatagttagg
301 aagttaagag aacaatttga gaacagaaca atagtctttg atcaacccac aggaggggac
//
last modified: Tue May 31 10:56 2022