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LOCUS	    AY756823		    1302 bp    RNA     linear	VRL 13-JUN-2005
DEFINITION  HIV-1 isolate 1067 from Malawi pol protein (pol) gene, partial cds
ACCESSION   AY756823
VERSION     AY756823.1 GI:59064852
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1302)
            Show all sequences for reference 1
  AUTHORS   Eshleman,S.H., Hoover,D.R., Chen,S., Hudelson,S.E., Guay,L.A.,
	    Mwatha,A., Fiscus,S.A., Mmiro,F., Musoke,P., Jackson,J.B.,
	    Kumwenda,N. and Taha,T.
  TITLE     Nevirapine (NVP) Resistance in Women with HIV-1 Subtype C, Compared
	    with Subtypes A and D, after the Administration of Single-Dose NVP
  JOURNAL   J. Infect. Dis. 192 (1), 30-36 (2005)
  PUBMED    15942891
REFERENCE   2 (bases 1 to 1302)
            Show all sequences for reference 2
  AUTHORS   Eshleman,S.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-SEP-2004) Pathology, The Johns Hopkins Medical
	    Institutions, 720 Rutland Avenue Ross Building 646, Baltimore, MD
	    21205, USA
COMMENT     These sequences are from the NVAZ, a mother/infant study conducted
	    in Malawi in 2000-2002 (info from Taha et al. 2003 PMID#14568737).
	    Thus the sample collection date is annotated as 2000-2002.
FEATURES             Location/Qualifiers
     source	     1..1302
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="1067"
		     /db_xref="taxon:11676"
		     /country="Malawi"
		     /note="subtype: C"
     gene	     <1..>1302
		     /gene="pol"
     CDS	     <1..>1302
		     /gene="pol"
		     /note="encodes protease and reverse transcriptase"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AAW84089.1"
		     /db_xref="GI:59064853"
		     /translation="PQITLWQRPLVSIKVGGQIKEALLDTGADDTVLEEMNLPGKWKP
		     KMIGGIGGFIKVRQYDQIPIEISGKKAIGTVLIGPTPVNIIGRNMLTQLGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTAICEEMEKEGKITKIGPENPYNTPVF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKXKSVTVLDVGDAYFSVP
		     LHESFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMIKILEPFRAKNPE
		     IVIXQYMDDLYVXSDLEIGQHRAKIEELREHLLRWGFTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPIQLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGAKALTDIV
		     PLTEEAELELAENREVLKEPVHGVYYDPSKDLIAEIQKQGQG"
BASE COUNT	506 a	 217 c	  285 g    288 t      6 other
ORIGIN
       1 cctcaaatca ctctttggca gcgaccyctt gtctcaataa aagtaggggg ccagataaag 
      61 gaggctctct tagacacagg agcagatgat acagtattag aagaaatgaa tttgccagga 
     121 aaatggaaac caaaaatgat aggrggaatt ggaggtttta tcaaagtaag acagtatgat 
     181 caaataccta tagaaattag tggaaaaaag gctataggta cagtattaat agggcccaca 
     241 cctgtcaaca taattggaag gaatatgttg actcagctcg gatgcacact aaattttcca 
     301 attagtccca ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaggtc 
     361 aaacaatggc cattgacaga agaaaaaata aaagcattaa cagcaatttg tgaggaaatg 
     421 gagaaggaag gaaaaattac aaaaattggr cctgaaaatc catataacac tccagtattt 
     481 gccataaaaa agaaggacag tactaagtgg agaaaattag tagatttcag ggaactcaat 
     541 aaaagaactc aagacttttg ggaggttcaa ttaggaatac cacacccagc agggttaaaa 
     601 aagaamaagt cagtgacagt actggatgtg ggggatgcat atttttcagt tcctttacat 
     661 gaaagcttca ggaaatatac tgcattcacc atacctagta taaacaatga aacaccaggg 
     721 attagatatc aatataatgt gctgccacag ggatggaaag gatcaccagc aatattccag 
     781 agtagcatga taaaaatctt agagcccttt agagcaaaaa atccagaaat agtcatctrt 
     841 caatatatgg atgacttgta tgtagsatct gacttagaaa tagggcaaca tagagcaaaa 
     901 atagaggagt taagagaaca tctattgagg tggggattta ccacaccaga caagaaacat 
     961 cagaaggaac ccccatttct ttggatgggg tatgaactcc atcctgacaa atggacagta 
    1021 cagcctatac agctgccaga aaaggatagc tggactgtca atgatataca gaagttagtg 
    1081 ggaaaattaa actgggcaag tcagatttac ccagggatta aagtaaagca actttgtaaa 
    1141 ctccttaggg gggccaaagc actaacagac atagtaccac taactgaaga ggcagaatta 
    1201 gaattggcag agaacaggga agttctaaaa gaaccagtac atggagtata ttatgaccca 
    1261 tcaaaagact taatagctga aatacagaag cagggtcaag gc
//
last modified: Tue May 31 10:56 2022


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