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LOCUS AY756823 1302 bp RNA linear VRL 13-JUN-2005
DEFINITION HIV-1 isolate 1067 from Malawi pol protein (pol) gene, partial cds
ACCESSION AY756823
VERSION AY756823.1 GI:59064852
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1302)
Show all sequences for reference 1
AUTHORS Eshleman,S.H., Hoover,D.R., Chen,S., Hudelson,S.E., Guay,L.A.,
Mwatha,A., Fiscus,S.A., Mmiro,F., Musoke,P., Jackson,J.B.,
Kumwenda,N. and Taha,T.
TITLE Nevirapine (NVP) Resistance in Women with HIV-1 Subtype C, Compared
with Subtypes A and D, after the Administration of Single-Dose NVP
JOURNAL J. Infect. Dis. 192 (1), 30-36 (2005)
PUBMED 15942891
REFERENCE 2 (bases 1 to 1302)
Show all sequences for reference 2
AUTHORS Eshleman,S.H.
TITLE Direct Submission
JOURNAL Submitted (22-SEP-2004) Pathology, The Johns Hopkins Medical
Institutions, 720 Rutland Avenue Ross Building 646, Baltimore, MD
21205, USA
COMMENT These sequences are from the NVAZ, a mother/infant study conducted
in Malawi in 2000-2002 (info from Taha et al. 2003 PMID#14568737).
Thus the sample collection date is annotated as 2000-2002.
FEATURES Location/Qualifiers
source 1..1302
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="1067"
/db_xref="taxon:11676"
/country="Malawi"
/note="subtype: C"
gene <1..>1302
/gene="pol"
CDS <1..>1302
/gene="pol"
/note="encodes protease and reverse transcriptase"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AAW84089.1"
/db_xref="GI:59064853"
/translation="PQITLWQRPLVSIKVGGQIKEALLDTGADDTVLEEMNLPGKWKP
KMIGGIGGFIKVRQYDQIPIEISGKKAIGTVLIGPTPVNIIGRNMLTQLGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTAICEEMEKEGKITKIGPENPYNTPVF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKXKSVTVLDVGDAYFSVP
LHESFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMIKILEPFRAKNPE
IVIXQYMDDLYVXSDLEIGQHRAKIEELREHLLRWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVQPIQLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGAKALTDIV
PLTEEAELELAENREVLKEPVHGVYYDPSKDLIAEIQKQGQG"
BASE COUNT 506 a 217 c 285 g 288 t 6 other
ORIGIN
1 cctcaaatca ctctttggca gcgaccyctt gtctcaataa aagtaggggg ccagataaag
61 gaggctctct tagacacagg agcagatgat acagtattag aagaaatgaa tttgccagga
121 aaatggaaac caaaaatgat aggrggaatt ggaggtttta tcaaagtaag acagtatgat
181 caaataccta tagaaattag tggaaaaaag gctataggta cagtattaat agggcccaca
241 cctgtcaaca taattggaag gaatatgttg actcagctcg gatgcacact aaattttcca
301 attagtccca ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaggtc
361 aaacaatggc cattgacaga agaaaaaata aaagcattaa cagcaatttg tgaggaaatg
421 gagaaggaag gaaaaattac aaaaattggr cctgaaaatc catataacac tccagtattt
481 gccataaaaa agaaggacag tactaagtgg agaaaattag tagatttcag ggaactcaat
541 aaaagaactc aagacttttg ggaggttcaa ttaggaatac cacacccagc agggttaaaa
601 aagaamaagt cagtgacagt actggatgtg ggggatgcat atttttcagt tcctttacat
661 gaaagcttca ggaaatatac tgcattcacc atacctagta taaacaatga aacaccaggg
721 attagatatc aatataatgt gctgccacag ggatggaaag gatcaccagc aatattccag
781 agtagcatga taaaaatctt agagcccttt agagcaaaaa atccagaaat agtcatctrt
841 caatatatgg atgacttgta tgtagsatct gacttagaaa tagggcaaca tagagcaaaa
901 atagaggagt taagagaaca tctattgagg tggggattta ccacaccaga caagaaacat
961 cagaaggaac ccccatttct ttggatgggg tatgaactcc atcctgacaa atggacagta
1021 cagcctatac agctgccaga aaaggatagc tggactgtca atgatataca gaagttagtg
1081 ggaaaattaa actgggcaag tcagatttac ccagggatta aagtaaagca actttgtaaa
1141 ctccttaggg gggccaaagc actaacagac atagtaccac taactgaaga ggcagaatta
1201 gaattggcag agaacaggga agttctaaaa gaaccagtac atggagtata ttatgaccca
1261 tcaaaagact taatagctga aatacagaag cagggtcaag gc
//
last modified: Tue May 31 10:56 2022