HIV Databases HIV Databases home HIV Databases home
HIV Sequence Database



Download: ENTIRE SEQUENCE SEQUENCE FRAGMENT start end
Format:  
View NCBI entry		Download GenBank file		Graphics View		Download GFF3 File

LOCUS	    AY619813		     354 bp    DNA     linear	VRL 02-JUN-2005
DEFINITION  HIV-1 isolate C3.X4.ci clone 3 from Sweden envelope glycoprotein
	    (env) gene, partial cds
ACCESSION   AY619813
VERSION     AY619813.1 GI:54660274
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 354)
            Show all sequences for reference 1
  AUTHORS   Clevestig,P., Maljkovic,I., Casper,C., Carlenor,E., Lindgren,S.,
	    Naver,L., Bohlin,A.B., Fenyo,E.M., Leitner,T. and Ehrnst,A.
  TITLE     The X4 Phenotype of HIV Type 1 Evolves from R5 in Two Children of
	    Mothers, Carrying X4, and Is Not Linked to Transmission
  JOURNAL   AIDS Res. Hum. Retroviruses 21 (5), 371-378 (2005)
  PUBMED    15929699
REFERENCE   2 (bases 1 to 354)
            Show all sequences for reference 2
  AUTHORS   Clevestig,P., Maljkovic,I., Casper,C., Carlenor,E., Fenyo,E.-M.,
	    Leitner,T. and Ehrnst,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-MAY-2004) Microbiology & Tumor Biology Center,
	    Karolinska Institutet, PO Box 280, Stockholm SE-171 77, Sweden
FEATURES             Location/Qualifiers
     source	     1..354
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /strain="Ca"
		     /isolate="C3.X4.ci"
		     /db_xref="taxon:11676"
		     /clone="3"
		     /country="Sweden"
		     /note="mother-child pair A subtype: D"
     gene	     <1..>354
		     /gene="env"
     CDS	     <1..>354
		     /gene="env"
		     /note="V3 region"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="AAV37290.1"
		     /db_xref="GI:54660275"
		     /translation="VVSTQLLLNGSLAEEEIIIRSENLTNNAKVIIVQLNESVTINCS
		     RPYTTLRKSTGIGPGRASYIAKIGDIRQAYCNISREGWNRTLHQVAEKLGDLFNRTTI
		     IFKPSSGGDPEITTHS"
BASE COUNT	138 a	  63 c	   72 g     81 t
ORIGIN
       1 gtagtgtcaa ctcaactgtt gttgaatgga agtctagcag aagaagagat aataatcaga 
      61 tctgaaaacc tcacaaataa tgctaaagtt ataatagtac agcttaatga gtctgtaaca 
     121 atcaattgct caaggcccta caccactctc agaaaaagta caggtatagg accggggcga 
     181 gcatcctata tagcaaagat aggtgatata agacaagcat attgtaacat tagtagggaa 
     241 ggatggaata gaactttaca ccaggtagct gaaaaattag gagacctttt taacaggaca 
     301 acaataattt ttaaaccatc ctcaggaggg gacccagaaa ttacaacaca cagc
//
last modified: Tue May 31 10:56 2022


Questions or comments? Contact us at seq-info@lanl.gov.

 
Operated by Triad National Security, LLC for the U.S. Department of Energy's National Nuclear Security Administration
© Copyright Triad National Security, LLC. All Rights Reserved | Disclaimer/Privacy

Dept of Health & Human Services Los Alamos National Institutes of Health