HIV Databases HIV Databases home HIV Databases home
HIV Sequence Database



Download: ENTIRE SEQUENCE SEQUENCE FRAGMENT start end
Format:  
View NCBI entry		Download GenBank file		Graphics View		Download GFF3 File

LOCUS	    AY611321		     450 bp    DNA     linear	VRL 01-JUL-2004
DEFINITION  HIV-1 isolate Ac-38 Day 64 1b1.fa from USA gag protein (gag) gene,
	    partial cds
ACCESSION   AY611321
VERSION     AY611321.1 GI:48927860
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 450)
            Show all sequences for reference 1
  AUTHORS   Allen,T.M., Altfeld,M., Yu,X.G., O'Sullivan,K.M., Lichterfeld,M.,
	    Le Gall,S., John,M., Mothe,B.R., Lee,P.K., Kalife,E.T., Cohen,D.E.,
	    Freedberg,K.A., Strick,D.A., Johnson,M.N., Sette,A.,
	    Rosenberg,E.S., Mallal,S.A., Goulder,P.J.R., Brander,C. and
	    Walker,B.D.
  TITLE     Selection, Transmission, and Reversion of an Antigen-Processing
	    Cytotoxic T-Lymphocyte Escape Mutation in Human Immunodeficiency
	    Virus Type 1 Infection
  JOURNAL   J. Virol. 78 (13), 7069-7078 (2004)
  PUBMED    15194783
REFERENCE   2 (bases 1 to 450)
            Show all sequences for reference 2
  AUTHORS   Allen,T.M., Altfeld,M., Yu,X.G., O'Sullivan,K.M., Lichterfeld,M.,
	    Le Gall,S., John,M., Mothe,B.R., Lee,P.K., Kalife,E.T., Cohen,D.E.,
	    Freedberg,K.A., Strick,D.A., Johnson,M.N., Sette,A.,
	    Rosenberg,E.S., Mallal,S.A., Goulder,P.J.R., Brander,C. and
	    Walker,B.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-APR-2004) Infectious Disease Division, Partners AIDS
	    Research Center and Massachusetts General Hospital, 149 13th
	    Street, Charlestown, MA 02129, USA
FEATURES             Location/Qualifiers
     source	     1..450
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="Ac-38 Day 64 1b1.fa"
		     /db_xref="taxon:11676"
		     /country="USA"
     gene	     1..>450
		     /gene="gag"
     CDS	     1..>450
		     /gene="gag"
		     /codon_start="1"
		     /transl_table="1"
		     /product="gag protein"
		     /protein_id="AAT47642.1"
		     /db_xref="GI:48927861"
		     /translation="MGARASVLSGGELDRWEKIRLRPGGKKKYRLKHIVWASRELERF
		     ALNPGLLETSAGCRQILGQLQPSLQTGSEELRSLYNTVATLYCVHQKIEVRDTKEALD
		     KIEEEQNKSKKKAQQAAADTGNSSQVSQNYPIVQNLQGQMVHQAISPR"
BASE COUNT	173 a	  83 c	  113 g     81 t
ORIGIN
       1 atgggtgcga gagcgtcagt attaagcggg ggagaattag atagatggga aaaaattcgg 
      61 ttaaggccag ggggaaaaaa gaaatataga ttaaaacata tagtatgggc aagcagggaa 
     121 ctagaacgat tcgcacttaa tcctggcctg ttagaaacat cagcaggctg tagacaaata 
     181 ctgggacagc tacagccatc tcttcagaca ggatcagaag agcttcgatc attgtataat 
     241 acagtagcaa ccctctattg tgtacatcaa aagatagagg taagagacac caaggaagct 
     301 ttagacaaga tagaggaaga gcaaaataaa agtaagaaaa aggcacagca agcagcagct 
     361 gacacaggaa acagcagcca ggtcagccaa aattacccta tagtgcagaa cctccagggg 
     421 caaatggtac atcaggccat atcacctaga 
//
last modified: Tue May 31 10:56 2022


Questions or comments? Contact us at seq-info@lanl.gov.

 
Operated by Triad National Security, LLC for the U.S. Department of Energy's National Nuclear Security Administration
© Copyright Triad National Security, LLC. All Rights Reserved | Disclaimer/Privacy

Dept of Health & Human Services Los Alamos National Institutes of Health