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LOCUS AY605639 717 bp RNA linear VRL 30-APR-2005
DEFINITION HIV-1 isolate TH233_RT from Thailand pol protein (pol) gene,
partial cds
ACCESSION AY605639
VERSION AY605639.1 GI:51342900
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 717)
Show all sequences for reference 1
AUTHORS Sirivichayakul,S. and Phanuphak,P.
TITLE RT and protease sequences from HIV-1 non-B infected persons from
Thailand
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 717)
Show all sequences for reference 2
AUTHORS Sirivichayakul,S. and Phanuphak,P.
TITLE Direct Submission
JOURNAL Submitted (23-APR-2004) Division of Allergy and Clinical
Immunology, Department of Medicine, Faculty of Medicine,
Chulalongkorn University, Rama IV Road, Bangkok 10330, Thailand
REFERENCE 3
Show all sequences for reference 3
AUTHORS Kantor,R., Katzenstein,D.A., Efron,B., Carvalho,A.P., Wynhoven,B.,
Cane,P., Clarke,J., Sirivichayakul,S., Soares,M.A., Snoeck,J.,
Pillay,C., Rudich,H., Rodrigues,R., Holguin,A., Ariyoshi,K.,
Bouzas,M.B., Cahn,P., Sugiura,W., Soriano,V., Brigido,L.F.,
Grossman,Z., Morris,L., Vandamme,A.M., Tanuri,A., Phanuphak,P.,
Weber,J.N., Pillay,D., Harrigan,P.R., Camacho,R., Schapiro,J.M. and
Shafer,R.W.
TITLE Impact of HIV-1 Subtype and Antiretroviral Therapy on Protease and
Reverse Transcriptase Genotype: Results of a Global Collaboration
JOURNAL PLoS Med 2 (4), E112 (2005)
PUBMED 15839752
COMMENT Subtype assigned by HIV database staff [JM 5/07].
FEATURES Location/Qualifiers
source 1..717
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="TH233_RT"
/db_xref="taxon:11676"
/country="Thailand"
gene <1..>717
/gene="pol"
CDS <1..>717
/gene="pol"
/note="encodes reverse transcriptase and protease"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AAU01495.1"
/db_xref="GI:51342901"
/translation="GPKVKQWPLTEEKIKALTEICKELEEEGKISKIGPENPYNTPIF
AIKKKNSDKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDESFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRIKNPE
IVIYQYMDDLYVGSDLEIGQHRTKIEELRAHLWKWGFYTPDKKHQKEPPFLWMGYELH
PDKWTVQPIELPERDSWTVND"
BASE COUNT 286 a 119 c 153 g 159 t
ORIGIN
1 ggaccaaagg ttaaacagtg gccattgaca gaagaaaaaa taaaagcatt aacagagatt
61 tgtaaagagc tggaagagga aggaaaaatc tcaaaaatcg ggcctgaaaa tccatacaat
121 actccaatat ttgctataaa gaaaaagaac agcgacaaat ggagaaaatt agtagatttt
181 agagagctca ataaaagaac tcaggacttt tgggaagttc aattaggaat accgcatcca
241 gcaggtttaa aaaagaaaaa atcagtaaca gtactagatg tgggagatgc atatttttca
301 gttcctttag atgaaagctt tagaaagtat acagcattca ccatacctag tataaacaat
361 gagacaccag gaatcagata tcagtacaat gtgctgccac agggatggaa agggtcaccg
421 gcaatattcc agagtagcat gacaaaaatc ttagagccct ttagaataaa aaatccagaa
481 atagttatct atcaatacat ggatgacttg tatgtaggat ctgatttaga aatagggcag
541 cacagaacaa aaatagagga gctgagagct catctatgga aatggggatt ttatacacca
601 gacaaaaagc atcagaagga gcctccattc ctttggatgg gatatgaact ccatcctgac
661 aaatggacag tccagcctat agaactgcca gaaagagaca gctggactgt caatgat
//
last modified: Tue May 31 10:56 2022