HIV Databases HIV Databases home HIV Databases home
HIV Sequence Database



Download: ENTIRE SEQUENCE SEQUENCE FRAGMENT start end
Format:  
View NCBI entry		Download GenBank file		Graphics View		Download GFF3 File

LOCUS	    AY535553		     387 bp    DNA     linear	VRL 17-AUG-2005
DEFINITION  HIV-1 isolate 053 from Estonia envelope glycoprotein (env) gene,
	    partial cds
ACCESSION   AY535553
VERSION     AY535553.1 GI:46242941
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 387)
            Show all sequences for reference 1
  AUTHORS   Adojaan,M., Kivisild,T., Mannik,A., Krispin,T., Ustina,V.,
	    Zilmer,K., Liebert,E., Jaroslavtsev,N., Priimagi,L., Tefanova,V.,
	    Schmidt,J., Krohn,K., Villems,R., Salminen,M. and Ustav,M.
  TITLE     Predominance of a Rare Type of HIV-1 in Estonia
  JOURNAL   J. Acquir. Immune Defic. Syndr. 39 (5), 598-605 (2005)
  PUBMED    16044014
REFERENCE   2 (bases 1 to 387)
            Show all sequences for reference 2
  AUTHORS   Adojaan,M., Kivisild,T., Mannik,A., Krispin,T., Ustina,V.,
	    Zilmer,K., Liebert,E., Jaroslavtsev,N., Priimagi,L., Tefanova,V.,
	    Schmidt,J., Krohn,K., Villems,R., Salminen,M. and Ustav,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-JAN-2004) FIT Biotech OYj Plc Eesti Filiaal, Nooruse
	    9, Tartu 50411, Estonia
FEATURES             Location/Qualifiers
     source	     1..387
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="053"
		     /isolation_source="peripheral blood mononuclear cells"
		     /db_xref="taxon:11676"
		     /country="Estonia"
		     /note="subtype: CRF06-cpx; group: M"
     gene	     <1..>387
		     /gene="env"
     CDS	     <1..>387
		     /gene="env"
		     /note="gp41"
		     /codon_start="2"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="AAS83575.1"
		     /db_xref="GI:46242942"
		     /translation="SNLLRAIEAQQHLLQLTVWGIKQLQARVLALERYVKDQQLLGIW
		     GCTGKLICPTNVPWNDSWSNKTFEEIWNNMTWIEWEREINNYTSHIYTLIEESQNQQE
		     KNEQELLALDKWASLWNWFDISNWLW"
BASE COUNT	136 a	  66 c	   94 g     91 t
ORIGIN
       1 gagcaatttg ctgagagcta tagaggcgca acagcatttg ttgcaactca cagtctgggg 
      61 cattaaacag ctccaggcaa gagtcctggc gttggagaga tacgtaaagg atcaacagct 
     121 cctaggaatt tggggatgca ctggaaaact catctgcccc actaatgtgc cctggaatga 
     181 tagttggagt aataaaactt ttgaagaaat ttggaataac atgacctgga tagaatggga 
     241 aagagaaatt aacaattaca catcacatat atacacccta attgaagaat cgcaaaatca 
     301 gcaggaaaag aatgaacaag aattactagc attggacaag tgggcaagtt tgtggaattg 
     361 gtttgacata tcaaactggc tgtggta
//
last modified: Tue May 31 10:56 2022


Questions or comments? Contact us at seq-info@lanl.gov.

 
Operated by Triad National Security, LLC for the U.S. Department of Energy's National Nuclear Security Administration
© Copyright Triad National Security, LLC. All Rights Reserved | Disclaimer/Privacy

Dept of Health & Human Services Los Alamos National Institutes of Health