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LOCUS AY525488 1027 bp RNA linear VRL 14-JUN-2004
DEFINITION HIV-1 isolate M3M from USA envelope glycoprotein (env) gene,
partial cds
ACCESSION AY525488
VERSION AY525488.1 GI:42425626
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1027)
Show all sequences for reference 1
AUTHORS Sagar,M., Kirkegaard,E., Long,E.M., Celum,C., Buchbinder,S.,
Daar,E.S. and Overbaugh,J.
TITLE Human Immunodeficiency Virus Type 1 (HIV-1) Diversity at Time of
Infection Is Not Restricted to Certain Risk Groups or Specific
HIV-1 Subtypes
JOURNAL J. Virol. 78 (13), 7279-7283 (2004)
PUBMED 15194805
REFERENCE 2 (bases 1 to 1027)
Show all sequences for reference 2
AUTHORS Sagar,M. and Overbaugh,J.
TITLE Direct Submission
JOURNAL Submitted (13-JAN-2004) Division of Human Biology, Fred Hutchinson
Cancer Research Center, 1100 Fairview Avenue North, C3-168,
Seattle, WA 98109, USA
FEATURES Location/Qualifiers
source 1..1027
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="M3M"
/db_xref="taxon:11676"
/country="USA"
gene <1..>1027
/gene="env"
CDS <1..>1027
/gene="env"
/codon_start="2"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="AAS16446.1"
/db_xref="GI:42425627"
/translation="LCVTLNCTDVNATNTKNSTWENMRGEIKNCSFDITTSLRDKKQK
EYALFYKLDIVPIKNENTSYRLISCNTSIITQACPKVSFEPIPIHYCAPAGFAILKCN
NKKFNGTGPCRNVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSANFSNNAKVIIVQ
LNESVAINCTRPNNNTRKGIPIGPGRAFYATGDIIGNIRRAHCNLSSTKWNDTLKRVV
GKLREQFGNETKIVFNHSSGGDPEIVMHSFNCGGEFFYCDTTRLFNSTWIWNATEESN
NTEKNITLPCRIKQIVNMWQEVGKAMYAPPIRGQIKCISNITWMMLTRDGGNETNETE
VFRPGGGD"
BASE COUNT 397 a 166 c 206 g 258 t
ORIGIN
1 actctgtgtt actttaaatt gcactgatgt aaatgctact aataccaaga atagtacctg
61 ggaaaatatg agaggagaaa taaaaaattg ctctttcgat atcaccacaa gtctaagaga
121 taagaagcag aaagaatatg cactttttta taagcttgat atagtaccaa taaaaaatga
181 gaatactagc tataggttga taagttgtaa cacctcaatc attacacagg cctgtccaaa
241 agtatccttt gagccaattc ccatacatta ttgtgccccg gctggttttg ctattctaaa
301 gtgtaataat aagaagttca atggaacagg gccatgtaga aatgtcagca cagtacaatg
361 tacacatgga attaagccag tagtatcaac tcaactgctg ttaaatggca gtctagcaga
421 agaagaggta gtaattagat cagcaaattt ctcgaacaat gctaaagtca tcatagtaca
481 actgaatgaa tctgtagcaa ttaattgtac aagacccaac aacaatacaa gaaaaggtat
541 acctatagga ccaggcagag cattttatgc aacaggagat ataataggaa atataagacg
601 agcacattgt aaccttagta gtacaaaatg gaacgacact ttaaaaaggg tagttggaaa
661 attaagagaa caatttggaa atgaaacaaa aatagtcttt aatcattcct caggaggaga
721 cccagaaatt gtaatgcaca gctttaattg tggaggggag tttttctact gtgatacaac
781 aagactattt aatagcactt ggatttggaa tgctacggaa gagtcaaata acactgaaaa
841 aaatatcacg ctcccatgca gaataaaaca aattgtaaac atgtggcagg aagtgggaaa
901 agcaatgtat gcccctccca tcagaggaca aattaaatgt atatcaaata ttacatggat
961 gatgttaaca agagatggtg gcaacgagac caatgagact gaggtcttca gacctggagg
1021 aggagat
//
last modified: Tue May 31 10:56 2022