HIV Databases HIV Databases home HIV Databases home
HIV Sequence Database



Download: ENTIRE SEQUENCE SEQUENCE FRAGMENT start end
Format:  
View NCBI entry		Download GenBank file		Graphics View		Download GFF3 File

LOCUS	    AY429176		     297 bp    RNA     linear	VRL 05-JAN-2004
DEFINITION  HIV-1 isolate C10p60_11 from USA protease (pol) gene, partial cds
ACCESSION   AY429176
VERSION     AY429176.1 GI:40455860
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 297)
            Show all sequences for reference 1
  AUTHORS   Persaud,D., Siberry,G.K., Ahonkhai,A., Kajdas,J., Monie,D.,
	    Hutton,N., Watson,D.C., Quinn,T.C., Ray,S.C. and Siliciano,R.F.
  TITLE     Continued Production of Drug-Sensitive Human Immunodeficiency Virus
	    Type 1 in Children on Combination Antiretroviral Therapy Who Have
	    Undetectable Viral Loads
  JOURNAL   J. Virol. 78 (2), 968-979 (2004)
  PUBMED    14694128
REFERENCE   2 (bases 1 to 297)
            Show all sequences for reference 2
  AUTHORS   Persaud,D., Siberry,G.K., Ahonkhai,A., Kajdas,J., Monie,D.,
	    Hutton,N., Watson,D.C., Quinn,T.C., Ray,S.C. and Siliciano,R.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-OCT-2003) Department of Medicine, Division of
	    Infectious Diseases, Johns Hopkins University School of Medicine,
	    720 Rutland Avenue, Ross 1049, Baltimore, MD 21205, USA
FEATURES             Location/Qualifiers
     source	     1..297
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="C10p60_11"
		     /isolation_source="plasma; pediatric patient C10, 60
		     months of ART"
		     /db_xref="taxon:11676"
		     /clone="11"
		     /country="USA"
		     /note="subtype: B"
     gene	     <1..>297
		     /gene="pol"
     CDS	     <1..>297
		     /gene="pol"
		     /note="PR"
		     /codon_start="1"
		     /transl_table="1"
		     /product="protease"
		     /protein_id="AAR86020.1"
		     /db_xref="GI:40455861"
		     /translation="PQITLWQRPLVTIKVGGQLKEALLDTGADDTVLEEMDLPGRWKP
		     KMIGGIGGFIKVRQYDQIPIEICGHRAIGTVLVGPTPVNIIGRNLLTQIGCTLNF"
BASE COUNT	103 a	  48 c	   72 g     74 t
ORIGIN
       1 cctcagatca ctctttggca acgacccctc gtcacaataa aggtaggggg gcaactaaag 
      61 gaagctctat tggatacagg agcagatgat acagtattag aagaaatgga tttgccagga 
     121 aggtggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtatgat 
     181 cagataccca tagaaatctg tggacataga gccataggta cagtattagt aggacctaca 
     241 cctgtcaaca taattggaag aaatctgttg actcagattg gttgtacttt aaatttt
//
last modified: Tue May 31 10:56 2022


Questions or comments? Contact us at seq-info@lanl.gov.

 
Operated by Triad National Security, LLC for the U.S. Department of Energy's National Nuclear Security Administration
© Copyright Triad National Security, LLC. All Rights Reserved | Disclaimer/Privacy

Dept of Health & Human Services Los Alamos National Institutes of Health