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LOCUS	    AY428698		    1302 bp    RNA     linear	VRL 16-NOV-2005
DEFINITION  HIV-1 isolate 554 from Uganda pol protein (pol) gene, partial cds
ACCESSION   AY428698
VERSION     AY428698.1 GI:38146454
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1302)
            Show all sequences for reference 1
  AUTHORS   Eshleman,S.H., Guay,L.A., Mwatha,A., Cunningham,S.P., Brown,E.R.,
	    Musoke,P., Mmiro,F. and Jackson,J.B.
  TITLE     Comparison of nevirapine (NVP) resistance in Ugandan women 7 days
	    vs. 6-8 weeks after single-dose nvp prophylaxis: HIVNET 012
  JOURNAL   AIDS Res. Hum. Retroviruses 20 (6), 595-599 (2004)
  PUBMED    15242535
REFERENCE   2 (bases 1 to 1302)
            Show all sequences for reference 2
  AUTHORS   Eshleman,S.H., Guay,L.A., Wang,J., Mwatha,A., Brown,E.R.,
	    Musoke,P., Mmiro,F. and Jackson,J.B.
  TITLE     Distinct patterns of emergence and fading of K103N and Y181C in
	    women with subtype A vs. D after single-dose nevirapine: HIVNET 012
  JOURNAL   J. Acquir. Immune Defic. Syndr. 40 (1), 24-29 (2005)
  PUBMED    16123677
REFERENCE   3 (bases 1 to 1302)
            Show all sequences for reference 3
  AUTHORS   Eshleman,S.H., Guay,L.A., Mwatha,A., Cunningham,S.P., Brown,E.R.,
	    Musoke,P., Mmiro,F. and Jackson,J.B.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-OCT-2003) Dept. Of Pathology, The Johns Hopkins
	    Medical Institutions, 720 Rutland Ave. Ross Bldg. Room 646,
	    Baltimore, MD 21205, USA
FEATURES             Location/Qualifiers
     source	     1..1302
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="554"
		     /db_xref="taxon:11676"
		     /clone="134392-I"
		     /country="Uganda"
     gene	     <1..>1302
		     /gene="pol"
     CDS	     <1..>1302
		     /gene="pol"
		     /note="contains protease and reverse transcriptase"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AAR11600.1"
		     /db_xref="GI:38146455"
		     /translation="PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEINLPGKWKP
		     KMIGGIGGFIKVRQYDQILVEICGYKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICTEMEKEGKISRIGPENPYNTPIF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPE
		     IVIYQYMDDLYVGSDLEIGQHRIKIEELREHLLKWGFTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPIKLPEKESWTVNDIQKLVGKLNWASQIYPGIKVRQLCKCLRGTKALTEVV
		     PLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQD"
BASE COUNT	528 a	 204 c	  264 g    294 t     12 other
ORIGIN
       1 cctcaaatca ctctttggca acgacccctc gtcacaataa aaataggggg acagttaaag 
      61 gaagctctat tagatacagg agcagatgat acagtattag aagaaataaa tttgccagga 
     121 aaatggaaac caaaaatgat agggggaatt ggaggcttta tcaaagtaag acagtatgat 
     181 caaatacttg tagaaatctg tggatataaa gctataggta cagtrttagt aggacctaca 
     241 cctgtcaaca taattggaag aaatttgttg actcagattg gttgcacttt aaattttcca 
     301 ataagtccta ttgaaactgt accagtaaaa ttaaagccag ggatggatgg cccaaaagtt 
     361 aaacaatggc cgttgacaga agaaaaaata aaagcactaa cagaaatttg tacagaaatg 
     421 gagaaggaag gaaaaatttc aagaattggg cctgaaaatc catacaatac tccaatattt 
     481 gccataaaga aaaaagacag tactaagtgg agaaaattag tagatttyag agarcttaat 
     541 aaragaactc aagacttctg ggaagttcaa ctaggaatac cacatcctgc agggctaaaa 
     601 aagaaaaaat cagtaacagt wctggatgtg ggtgatgcat atttttcagt tcccttagat 
     661 aaagacttta gaaaatatac ygcattcacc atacctagya taaacaatga gacaccagga 
     721 attaggtatc agtacaatgt gcttccacaa ggatggaaag ggtcaccrgc aatattccaa 
     781 agtagcatga caaaaatctt agaacctttt agaaaacaga atccagaaat agttatctat 
     841 caatacatgg atgatttrta tgtaggatct gacttagaaa tagggcagca tagaataaaa 
     901 atagaggart taagggaaca cttattgaag tggggattta ccacaccaga caaaaagcat 
     961 caaaaggaac ctccatttct ttggatgggk tatgaactac atcctgataa atggacagta 
    1021 cagcctataa aactgccaga aaaggaaagc tggactgtca atgatataca gaagttagta 
    1081 ggaaaattaa attgggcaag ccagatttat ccaggaatca aagtaagaca attatgcaaa 
    1141 tgccttaggg gaacyaaagc actgacagaa gtagtaccac taacagaaga agcagaatta 
    1201 gaactggcag aaaacaggga aattctaaaa gaaccagtac atggagtgta ttatgaccca 
    1261 tcaaaagact taatagcaga aatacagaaa caagggcaag ac
//
last modified: Tue May 31 10:56 2022


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