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LOCUS AY428698 1302 bp RNA linear VRL 16-NOV-2005
DEFINITION HIV-1 isolate 554 from Uganda pol protein (pol) gene, partial cds
ACCESSION AY428698
VERSION AY428698.1 GI:38146454
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1302)
Show all sequences for reference 1
AUTHORS Eshleman,S.H., Guay,L.A., Mwatha,A., Cunningham,S.P., Brown,E.R.,
Musoke,P., Mmiro,F. and Jackson,J.B.
TITLE Comparison of nevirapine (NVP) resistance in Ugandan women 7 days
vs. 6-8 weeks after single-dose nvp prophylaxis: HIVNET 012
JOURNAL AIDS Res. Hum. Retroviruses 20 (6), 595-599 (2004)
PUBMED 15242535
REFERENCE 2 (bases 1 to 1302)
Show all sequences for reference 2
AUTHORS Eshleman,S.H., Guay,L.A., Wang,J., Mwatha,A., Brown,E.R.,
Musoke,P., Mmiro,F. and Jackson,J.B.
TITLE Distinct patterns of emergence and fading of K103N and Y181C in
women with subtype A vs. D after single-dose nevirapine: HIVNET 012
JOURNAL J. Acquir. Immune Defic. Syndr. 40 (1), 24-29 (2005)
PUBMED 16123677
REFERENCE 3 (bases 1 to 1302)
Show all sequences for reference 3
AUTHORS Eshleman,S.H., Guay,L.A., Mwatha,A., Cunningham,S.P., Brown,E.R.,
Musoke,P., Mmiro,F. and Jackson,J.B.
TITLE Direct Submission
JOURNAL Submitted (06-OCT-2003) Dept. Of Pathology, The Johns Hopkins
Medical Institutions, 720 Rutland Ave. Ross Bldg. Room 646,
Baltimore, MD 21205, USA
FEATURES Location/Qualifiers
source 1..1302
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="554"
/db_xref="taxon:11676"
/clone="134392-I"
/country="Uganda"
gene <1..>1302
/gene="pol"
CDS <1..>1302
/gene="pol"
/note="contains protease and reverse transcriptase"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AAR11600.1"
/db_xref="GI:38146455"
/translation="PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEINLPGKWKP
KMIGGIGGFIKVRQYDQILVEICGYKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICTEMEKEGKISRIGPENPYNTPIF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPE
IVIYQYMDDLYVGSDLEIGQHRIKIEELREHLLKWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVQPIKLPEKESWTVNDIQKLVGKLNWASQIYPGIKVRQLCKCLRGTKALTEVV
PLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQD"
BASE COUNT 528 a 204 c 264 g 294 t 12 other
ORIGIN
1 cctcaaatca ctctttggca acgacccctc gtcacaataa aaataggggg acagttaaag
61 gaagctctat tagatacagg agcagatgat acagtattag aagaaataaa tttgccagga
121 aaatggaaac caaaaatgat agggggaatt ggaggcttta tcaaagtaag acagtatgat
181 caaatacttg tagaaatctg tggatataaa gctataggta cagtrttagt aggacctaca
241 cctgtcaaca taattggaag aaatttgttg actcagattg gttgcacttt aaattttcca
301 ataagtccta ttgaaactgt accagtaaaa ttaaagccag ggatggatgg cccaaaagtt
361 aaacaatggc cgttgacaga agaaaaaata aaagcactaa cagaaatttg tacagaaatg
421 gagaaggaag gaaaaatttc aagaattggg cctgaaaatc catacaatac tccaatattt
481 gccataaaga aaaaagacag tactaagtgg agaaaattag tagatttyag agarcttaat
541 aaragaactc aagacttctg ggaagttcaa ctaggaatac cacatcctgc agggctaaaa
601 aagaaaaaat cagtaacagt wctggatgtg ggtgatgcat atttttcagt tcccttagat
661 aaagacttta gaaaatatac ygcattcacc atacctagya taaacaatga gacaccagga
721 attaggtatc agtacaatgt gcttccacaa ggatggaaag ggtcaccrgc aatattccaa
781 agtagcatga caaaaatctt agaacctttt agaaaacaga atccagaaat agttatctat
841 caatacatgg atgatttrta tgtaggatct gacttagaaa tagggcagca tagaataaaa
901 atagaggart taagggaaca cttattgaag tggggattta ccacaccaga caaaaagcat
961 caaaaggaac ctccatttct ttggatgggk tatgaactac atcctgataa atggacagta
1021 cagcctataa aactgccaga aaaggaaagc tggactgtca atgatataca gaagttagta
1081 ggaaaattaa attgggcaag ccagatttat ccaggaatca aagtaagaca attatgcaaa
1141 tgccttaggg gaacyaaagc actgacagaa gtagtaccac taacagaaga agcagaatta
1201 gaactggcag aaaacaggga aattctaaaa gaaccagtac atggagtgta ttatgaccca
1261 tcaaaagact taatagcaga aatacagaaa caagggcaag ac
//
last modified: Tue May 31 10:56 2022