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LOCUS	    AY370101		     556 bp    DNA     linear	VRL 02-DEC-2005
DEFINITION  HIV-1 isolate 11393R from Spain pol protein (pol) gene, partial cds
ACCESSION   AY370101
VERSION     AY370101.1 GI:34559000
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 556)
            Show all sequences for reference 1
  AUTHORS   Chakraborty,B., Valer,L., de Mendoza,C., Soriano,V. and
	    Quinones-Mateu,M.E.
  TITLE     Failure to detect human immunodeficiency virus type 1
	    superinfection in 28 HIV-seroconcordant individuals with high risk
	    of reexposure to the virus
  JOURNAL   AIDS Res. Hum. Retroviruses 20 (9), 1026-1031 (2004)
  PUBMED    15585092
REFERENCE   2 (bases 1 to 556)
            Show all sequences for reference 2
  AUTHORS   Chakraborty,B., Valer,L., Tadele,M., Kiser,P., de Mendoza,C.,
	    Rangel,H.R., Weber,J., Mirza,M., Marotta,M.L., Stoddart,C.A.,
	    Soriano,V. and Quinines-Mateu,M.E.
  TITLE     Failure to Detect HIV-1 Superinfection in HIV-seroconcordant
	    individuals with High Risk of Re-exposure to the Virus. Is Fitness
	    Playing a Role in In Vivo HIV-1 Superinfection?
  JOURNAL   Unpublished
REFERENCE   3 (bases 1 to 556)
            Show all sequences for reference 3
  AUTHORS   Chakraborty,B., Valer,L., Tadele,M., Kiser,P., de Mendoza,C.,
	    Rangel,H.R., Weber,J., Mirza,M., Marotta,M.L., Stoddart,C.A.,
	    Soriano,V. and Quinines-Mateu,M.E.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-AUG-2003) Service of Infectious Diseases, Hospital
	    Carlos III, Sinesio Delgado 10, Madrid 28029, Spain
REFERENCE   4
            Show all sequences for reference 4
  AUTHORS   Chakraborty,B., Kiser,P., Rangel,H.R., Weber,J., Mirza,M.,
	    Marotta,M.L., Asaad,R., Rodriguez,B., Valdez,H., Lederman,M.M. and
	    Quinones-Mateu,M.E.
  TITLE     Can HIV-1 superinfection compromise antiretroviral therapy?
  JOURNAL   AIDS 18 (1), 132-134 (2004)
  PUBMED    15090842
FEATURES             Location/Qualifiers
     source	     1..556
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="11393R"
		     /isolation_source="patient"
		     /db_xref="taxon:11676"
		     /country="Spain"
		     /note="subtype: B"
     gene	     <1..>556
		     /gene="pol"
     CDS	     <1..>556
		     /gene="pol"
		     /note="contains RT and protease"
		     /codon_start="3"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AAQ75264.1"
		     /db_xref="GI:34559001"
		     /translation="KALVEICTELEKEGKISKIGPENPYNTPXFAIKKKBSTRWRKLV
		     DFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKEFRKYTAFTXP
		     STNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPEMVIYQYMDDLYVGS
		     DLEIEQHRTKXEELRQLWRWGFYTP"
BASE COUNT	218 a	  84 c	  110 g    133 t     11 other
ORIGIN
       1 taaaagcatt agtagaaatt tgtacagaay tggaaaagga aggaaaaatt tcaaaaattg 
      61 ggcctgaaaa tccatacaat actccartat ttgccataaa gaaaaagrac agtactagat 
     121 ggagaaaatt agtagatttc agrgaactta ataagagaac tcaagactty tgggaagttc 
     181 aattaggaat accacatcct gcaggkttaa aaaagaaaaa atcagttaca gtactggatg 
     241 tgggtgatgc atatttttca gttcccttag ataaagaatt caggaartat actgcattta 
     301 ccrtacctag cactaacaat gagacaccag ggattagata tcagtacaat gtgcttccac 
     361 agggatggaa aggatcacca gcaatattcc aaagtagcat gacaaaaatt ytagagcctt 
     421 ttagaaagca aaacccagag atggttatct atcaatacat ggatgatttg tatgtaggat 
     481 ccgacttaga aatagagcag catagaacaa aartagagga actaagacaa ctgtggagrt 
     541 ggggatttta cacacc
//
last modified: Tue May 31 10:56 2022


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