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LOCUS	    AY348385		     609 bp    RNA     linear	VRL 15-APR-2004
DEFINITION  HIV-1 isolate p3c085 clone 2 from USA envelope glycoprotein (env)
	    gene, partial cds
ACCESSION   AY348385
VERSION     AY348385.1 GI:33590723
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 609)
            Show all sequences for reference 1
  AUTHORS   Shankarappa,R., Margolick,J.B., Gange,S., Gange,S.J., Rodrigo,A.G.,
	    Upchurch,D., Farzadegan,H., Gupta,P., Rinaldo,C.R., Learn,G.H.,
	    He,X., Huang,X.-L. and Mullins,J.I.
  TITLE     Consistent viral evolutionary changes associated with the
	    progression of human immunodeficiency virus type 1 infection
  JOURNAL   J. Virol. 73 (12), 10489-10502 (1999)
  PUBMED    10559367
REFERENCE   2 (bases 1 to 609)
            Show all sequences for reference 2
  AUTHORS   Shriner,D., Shankarappa,R., Jensen,M.A., Nickle,D.C., Mittler,J.E.,
	    Margolick,J.B. and Mullins,J.I.
  TITLE     Influence of Random Genetic Drift on Human Immunodeficiency Virus
	    Type 1 env Evolution During Chronic Infection
  JOURNAL   Genetics 166 (3), 1155-1164 (2004)
  PUBMED    15082537
REFERENCE   3 (bases 1 to 609)
            Show all sequences for reference 3
  AUTHORS   Shriner,D., Shankarappa,R., Jensen,M.A., Nickle,D.C., Mittler,J.E.,
	    Margolick,J.B. and Mullins,J.I.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-JUL-2003) Department of Microbiology, University of
	    Washington, Box 358070, Seattle, WA 98195-8070, USA
REFERENCE   4
            Show all sequences for reference 4
  AUTHORS   Jensen,M.A., Li,F., van 't Wout,A.B., Nickle,D.C., Shriner,D.,
	    He,H.-X., McLaughlin,S., Shankarappa,R., Margolick,J.B. and
	    Mullins,J.I.
  CONSRTM   Multicenter AIDS Cohort Study
  TITLE     Improved Coreceptor Usage Prediction and Genotypic Monitoring of
	    R5-to-X4 Transition by Motif Analysis of Human Immunodeficiency
	    Virus Type 1 env V3 Loop Sequences
  JOURNAL   J. Virol. 77 (24), 13376-13388 (2003)
  PUBMED    14645592
COMMENT     Sequences AF204402-204670, AF137629-138703, and AY348544-348333:
	    the 3-digit number in each sample name is months
	    post-seroconversion. Sampling years are estimated based on
	    enrollment in 1983-84 incremented by months post-seroconversion.
	    Data on viral load, CD4, and CD8 provided by J. Mullins [JM 3/06]
FEATURES             Location/Qualifiers
     source	     1..609
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="p3c085"
		     /db_xref="taxon:11676"
		     /clone="2"
		     /country="USA"
     gene	     <1..>609
		     /gene="env"
		     /note="gp120"
     CDS	     <1..>609
		     /gene="env"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="AAQ22824.1"
		     /db_xref="GI:33590724"
		     /translation="EEVVIKSENFSDNAKTIIVQLKNPVKINCTRPNNNTRKSIHIGP
		     GKAIYATEKIIGNIRQAHCTISREEWNSTLKQIVIKLREKFGSNTTIVLNQSSGGDPE
		     IVMHSFNCGGEFFYCNSAQLFNSTWNSTQQLNDTRENIILPCRIKQIINMWQEVGKAM
		     YAPPIQGLIRCSSNITGLLLTRDGGTDKNGTNSENRTEIFRPG"
BASE COUNT	256 a	  93 c	  118 g    142 t
ORIGIN
       1 gaagaggtag taattaaatc tgaaaatttc tcggacaatg ctaaaaccat aatagtacag 
      61 ctgaaaaacc ctgtaaaaat taattgtaca agacccaaca acaatacaag aaaaagtata 
     121 catataggac cggggaaagc aatttatgca acagaaaaaa taataggaaa tataagacaa 
     181 gcacattgta ccattagtag agaagaatgg aatagcactt taaaacagat agttataaaa 
     241 ttaagagaaa aatttgggag taatacaaca atagtcctta atcaatcctc aggaggggac 
     301 ccagaaattg tgatgcacag ctttaattgt ggaggggaat ttttctactg taattcagca 
     361 caactgttta atagtacttg gaattcaaca caacagttaa atgatactag agagaatatc 
     421 atacttccat gcagaataaa acaaattata aacatgtggc aggaagtagg aaaagcaatg 
     481 tatgcccctc ccatccaagg actaattaga tgttcatcaa atattacagg gctgctatta 
     541 acaagagatg gtggtacaga caagaatggg acaaatagcg agaataggac agagatcttc 
     601 agacctgga
//
last modified: Tue May 31 10:56 2022


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