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LOCUS AY348385 609 bp RNA linear VRL 15-APR-2004
DEFINITION HIV-1 isolate p3c085 clone 2 from USA envelope glycoprotein (env)
gene, partial cds
ACCESSION AY348385
VERSION AY348385.1 GI:33590723
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 609)
Show all sequences for reference 1
AUTHORS Shankarappa,R., Margolick,J.B., Gange,S., Gange,S.J., Rodrigo,A.G.,
Upchurch,D., Farzadegan,H., Gupta,P., Rinaldo,C.R., Learn,G.H.,
He,X., Huang,X.-L. and Mullins,J.I.
TITLE Consistent viral evolutionary changes associated with the
progression of human immunodeficiency virus type 1 infection
JOURNAL J. Virol. 73 (12), 10489-10502 (1999)
PUBMED 10559367
REFERENCE 2 (bases 1 to 609)
Show all sequences for reference 2
AUTHORS Shriner,D., Shankarappa,R., Jensen,M.A., Nickle,D.C., Mittler,J.E.,
Margolick,J.B. and Mullins,J.I.
TITLE Influence of Random Genetic Drift on Human Immunodeficiency Virus
Type 1 env Evolution During Chronic Infection
JOURNAL Genetics 166 (3), 1155-1164 (2004)
PUBMED 15082537
REFERENCE 3 (bases 1 to 609)
Show all sequences for reference 3
AUTHORS Shriner,D., Shankarappa,R., Jensen,M.A., Nickle,D.C., Mittler,J.E.,
Margolick,J.B. and Mullins,J.I.
TITLE Direct Submission
JOURNAL Submitted (23-JUL-2003) Department of Microbiology, University of
Washington, Box 358070, Seattle, WA 98195-8070, USA
REFERENCE 4
Show all sequences for reference 4
AUTHORS Jensen,M.A., Li,F., van 't Wout,A.B., Nickle,D.C., Shriner,D.,
He,H.-X., McLaughlin,S., Shankarappa,R., Margolick,J.B. and
Mullins,J.I.
CONSRTM Multicenter AIDS Cohort Study
TITLE Improved Coreceptor Usage Prediction and Genotypic Monitoring of
R5-to-X4 Transition by Motif Analysis of Human Immunodeficiency
Virus Type 1 env V3 Loop Sequences
JOURNAL J. Virol. 77 (24), 13376-13388 (2003)
PUBMED 14645592
COMMENT Sequences AF204402-204670, AF137629-138703, and AY348544-348333:
the 3-digit number in each sample name is months
post-seroconversion. Sampling years are estimated based on
enrollment in 1983-84 incremented by months post-seroconversion.
Data on viral load, CD4, and CD8 provided by J. Mullins [JM 3/06]
FEATURES Location/Qualifiers
source 1..609
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="p3c085"
/db_xref="taxon:11676"
/clone="2"
/country="USA"
gene <1..>609
/gene="env"
/note="gp120"
CDS <1..>609
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="AAQ22824.1"
/db_xref="GI:33590724"
/translation="EEVVIKSENFSDNAKTIIVQLKNPVKINCTRPNNNTRKSIHIGP
GKAIYATEKIIGNIRQAHCTISREEWNSTLKQIVIKLREKFGSNTTIVLNQSSGGDPE
IVMHSFNCGGEFFYCNSAQLFNSTWNSTQQLNDTRENIILPCRIKQIINMWQEVGKAM
YAPPIQGLIRCSSNITGLLLTRDGGTDKNGTNSENRTEIFRPG"
BASE COUNT 256 a 93 c 118 g 142 t
ORIGIN
1 gaagaggtag taattaaatc tgaaaatttc tcggacaatg ctaaaaccat aatagtacag
61 ctgaaaaacc ctgtaaaaat taattgtaca agacccaaca acaatacaag aaaaagtata
121 catataggac cggggaaagc aatttatgca acagaaaaaa taataggaaa tataagacaa
181 gcacattgta ccattagtag agaagaatgg aatagcactt taaaacagat agttataaaa
241 ttaagagaaa aatttgggag taatacaaca atagtcctta atcaatcctc aggaggggac
301 ccagaaattg tgatgcacag ctttaattgt ggaggggaat ttttctactg taattcagca
361 caactgttta atagtacttg gaattcaaca caacagttaa atgatactag agagaatatc
421 atacttccat gcagaataaa acaaattata aacatgtggc aggaagtagg aaaagcaatg
481 tatgcccctc ccatccaagg actaattaga tgttcatcaa atattacagg gctgctatta
541 acaagagatg gtggtacaga caagaatggg acaaatagcg agaataggac agagatcttc
601 agacctgga
//
last modified: Tue May 31 10:56 2022