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LOCUS AY348365 630 bp RNA linear VRL 15-APR-2004
DEFINITION HIV-1 isolate p2p158 clone 9 from USA envelope glycoprotein (env)
gene, partial cds
ACCESSION AY348365
VERSION AY348365.1 GI:33590683
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 630)
Show all sequences for reference 1
AUTHORS Shankarappa,R., Margolick,J.B., Gange,S., Gange,S.J., Rodrigo,A.G.,
Upchurch,D., Farzadegan,H., Gupta,P., Rinaldo,C.R., Learn,G.H.,
He,X., Huang,X.-L. and Mullins,J.I.
TITLE Consistent viral evolutionary changes associated with the
progression of human immunodeficiency virus type 1 infection
JOURNAL J. Virol. 73 (12), 10489-10502 (1999)
PUBMED 10559367
REFERENCE 2 (bases 1 to 630)
Show all sequences for reference 2
AUTHORS Shriner,D., Shankarappa,R., Jensen,M.A., Nickle,D.C., Mittler,J.E.,
Margolick,J.B. and Mullins,J.I.
TITLE Influence of Random Genetic Drift on Human Immunodeficiency Virus
Type 1 env Evolution During Chronic Infection
JOURNAL Genetics 166 (3), 1155-1164 (2004)
PUBMED 15082537
REFERENCE 3 (bases 1 to 630)
Show all sequences for reference 3
AUTHORS Shriner,D., Shankarappa,R., Jensen,M.A., Nickle,D.C., Mittler,J.E.,
Margolick,J.B. and Mullins,J.I.
TITLE Direct Submission
JOURNAL Submitted (23-JUL-2003) Department of Microbiology, University of
Washington, Box 358070, Seattle, WA 98195-8070, USA
REFERENCE 4
Show all sequences for reference 4
AUTHORS Jensen,M.A., Li,F., van 't Wout,A.B., Nickle,D.C., Shriner,D.,
He,H.-X., McLaughlin,S., Shankarappa,R., Margolick,J.B. and
Mullins,J.I.
CONSRTM Multicenter AIDS Cohort Study
TITLE Improved Coreceptor Usage Prediction and Genotypic Monitoring of
R5-to-X4 Transition by Motif Analysis of Human Immunodeficiency
Virus Type 1 env V3 Loop Sequences
JOURNAL J. Virol. 77 (24), 13376-13388 (2003)
PUBMED 14645592
COMMENT Sequences AF204402-204670, AF137629-138703, and AY348544-348333:
the 3-digit number in each sample name is months
post-seroconversion. Sampling years are estimated based on
enrollment in 1983-84 incremented by months post-seroconversion.
Data on viral load, CD4, and CD8 provided by J. Mullins [JM 3/06]
FEATURES Location/Qualifiers
source 1..630
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="p2p158"
/db_xref="taxon:11676"
/clone="9"
/country="USA"
gene <1..>630
/gene="env"
/note="gp120"
CDS <1..>630
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="AAQ22804.1"
/db_xref="GI:33590684"
/translation="EEEVVVRSQNFSNNAKTIIVQLKDAVEINCTRPNNNTRKSIHLG
LGRAFYATDNIIGDTRQAHCNISKTKWNDTLKKVVEKLGEQFRNTTRIVFNQSSGGDP
EIVMHSFNCGGEFFYCNTTKLFYSTWDKSNSTGVNGNGPWNATKMPNNNGETIILPCK
IKQIINMWQEVGKAMYAPPIRGQIRCSSNITGLLLTSDGGGNTNETFGPG"
BASE COUNT 252 a 97 c 130 g 151 t
ORIGIN
1 gaagaagagg tagtagttag gtctcaaaat ttctcgaaca atgctaaaac cataatagta
61 cagctgaagg acgctgtaga aattaattgt acaagaccca acaacaatac aagaaaaagt
121 atacatttag gactagggag agcattttat gcaacagaca acataatagg agatacaaga
181 caagcacatt gtaacattag taaaacaaaa tggaatgaca ctttaaaaaa ggtagttgaa
241 aaattaggcg aacaatttag gaatacaaca agaatagtct ttaatcaatc ctcaggaggg
301 gacccagaaa ttgtaatgca cagttttaat tgtggagggg aatttttcta ctgtaataca
361 acaaaactgt tttatagtac ttgggacaag agtaatagta ctggggttaa tggtaatggt
421 ccttggaatg ctactaaaat gccaaataac aatggagaaa ctatcatact cccatgcaaa
481 ataaaacaaa ttataaacat gtggcaggaa gtaggaaaag caatgtatgc ccctcccatc
541 agaggacaaa ttagatgttc atcaaatatt acagggctgc tactaacaag cgatggtggt
601 ggtaatacga atgagacctt cggacctgga
//
last modified: Tue May 31 10:56 2022