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LOCUS AY305955 909 bp DNA linear VRL 18-APR-2005
DEFINITION HIV-1 isolate CA637-2000 from USA reverse transcriptase (pol) gene,
partial cds
ACCESSION AY305955
VERSION AY305955.1 GI:32250844
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 909)
Show all sequences for reference 1
AUTHORS Gonzales,M.J., Belitskaya,I., Dupnik,K.M., Rhee,S.Y., Rhee,S.-Y.
and Shafer,R.W.
TITLE Protease and reverse transcriptase mutation patterns in HIV type 1
isolates from heavily treated persons: comparison of isolates from
Northern California with isolates from other regions
JOURNAL AIDS Res. Hum. Retroviruses 19 (10), 909-915 (2003)
PUBMED 14601580
REFERENCE 2 (bases 1 to 909)
Show all sequences for reference 2
AUTHORS Gonzales,M.J., Belitskaya,I., Dupnik,K.M., Rhee,S.-Y. and
Shafer,R.W.
TITLE Direct Submission
JOURNAL Submitted (25-MAY-2003) Department of Medicine/Div. of Infectious
Diseases, Stanford University, 300 Pasteur Drive, Grant Bldg, Room
S-156, Stanford, CA 94350-5107, USA
COMMENT The researchers analyzed HIV-1 protease and RT sequences of
isolates from heavily treated persons with detectable plasma HIV-1
RNA who were receiving antiretroviral therapy. Analysis was
restricted to protease sequences (positions 1090) from persons
treated with three or more protease inhibitors and RT sequences
(positions 40240) from persons treated with four or more
nucleoside RT inhibitors.
FEATURES Location/Qualifiers
source 1..909
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="CA637-2000"
/db_xref="taxon:11676"
/country="USA"
gene <1..>909
/gene="pol"
CDS <1..>909
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="reverse transcriptase"
/protein_id="AAP74279.1"
/db_xref="GI:32250845"
/translation="PISPIETVPVKLKPGMDGPRVKQWPLTEEKIKALVEICTELEKE
GKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKK
NKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIF
QSSMTKILEPFRKQNPDIVIYQYVDDLYVGSDLEIGQHRAKIEELRQHLLKWGFYTPD
KKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKV
KQLCKLLRGTKALTEVVPXTKEAELEL"
BASE COUNT 356 a 153 c 191 g 207 t 2 other
ORIGIN
1 cccattagtc ctattgaaac tgtaccagta aaattaaagc caggaatgga tggcccaaga
61 gttaaacaat ggccattgac agaggaaaaa ataaaagcat tagtagaaat ttgtacagaa
121 ttggaaaagg aaggaaaaat ttcaaaaatt gggcctgaaa atccatacaa tactccagta
181 ttcgccataa agaaaaaaga cagcactaaa tggagaaaat tagtagattt cagagaactt
241 aataagagaa ctcaagactt ctgggaagtt caattaggaa taccacatcc cgcagggtta
301 aaaaagaaca aatcagtaac agtactggat gtgggtgatg catatttttc agttccctta
361 gatgaagact tcaggaagta tactgcattt accataccta gtacaaacaa tgagacacct
421 gggataaggt accagtacaa tgtgcttccg cagggatgga agggatcacc agcaatattc
481 caaagtagta tgacaaaaat cttagagcct tttagaaaac aaaatccaga tatagttatc
541 tatcaatacg tggatgattt gtatgtagga tctgacttag aaatagggca gcatagagca
601 aaaatagagg aactgagaca acatttgttg aagtggggat tttacacacc agacaaaaaa
661 catcagaaag aacctccatt cctttggatg ggttatgaac tccatcctga taaatggaca
721 gtacagccta tagtgctgcc agaaaaggac agctggactg tcaatgacat acagaagtta
781 gtgggaaaat taaattgggc magtcagatt tacccaggga ttaaagtaaa gcaattatgt
841 aaactcctta ggggaaccaa agcactaaca gaagtagtac ctckaacaaa agaagcagag
901 ctagaactg
//
last modified: Tue May 31 10:56 2022