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LOCUS	    AY305955		     909 bp    DNA     linear	VRL 18-APR-2005
DEFINITION  HIV-1 isolate CA637-2000 from USA reverse transcriptase (pol) gene,
	    partial cds
ACCESSION   AY305955
VERSION     AY305955.1 GI:32250844
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 909)
            Show all sequences for reference 1
  AUTHORS   Gonzales,M.J., Belitskaya,I., Dupnik,K.M., Rhee,S.Y., Rhee,S.-Y.
	    and Shafer,R.W.
  TITLE     Protease and reverse transcriptase mutation patterns in HIV type 1
	    isolates from heavily treated persons: comparison of isolates from
	    Northern California with isolates from other regions
  JOURNAL   AIDS Res. Hum. Retroviruses 19 (10), 909-915 (2003)
  PUBMED    14601580
REFERENCE   2 (bases 1 to 909)
            Show all sequences for reference 2
  AUTHORS   Gonzales,M.J., Belitskaya,I., Dupnik,K.M., Rhee,S.-Y. and
	    Shafer,R.W.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2003) Department of Medicine/Div. of Infectious
	    Diseases, Stanford University, 300 Pasteur Drive, Grant Bldg, Room
	    S-156, Stanford, CA 94350-5107, USA
COMMENT     The researchers analyzed HIV-1 protease and RT sequences of
	    isolates from heavily treated persons with detectable plasma HIV-1
	    RNA who were receiving antiretroviral therapy. Analysis was
	    restricted to protease sequences (positions 10–90) from persons
	    treated with three or more protease inhibitors and RT sequences
	    (positions 40–240) from persons treated with four or more
	    nucleoside RT inhibitors.
FEATURES             Location/Qualifiers
     source	     1..909
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="CA637-2000"
		     /db_xref="taxon:11676"
		     /country="USA"
     gene	     <1..>909
		     /gene="pol"
     CDS	     <1..>909
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="reverse transcriptase"
		     /protein_id="AAP74279.1"
		     /db_xref="GI:32250845"
		     /translation="PISPIETVPVKLKPGMDGPRVKQWPLTEEKIKALVEICTELEKE
		     GKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKK
		     NKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIF
		     QSSMTKILEPFRKQNPDIVIYQYVDDLYVGSDLEIGQHRAKIEELRQHLLKWGFYTPD
		     KKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKV
		     KQLCKLLRGTKALTEVVPXTKEAELEL"
BASE COUNT	356 a	 153 c	  191 g    207 t      2 other
ORIGIN
       1 cccattagtc ctattgaaac tgtaccagta aaattaaagc caggaatgga tggcccaaga 
      61 gttaaacaat ggccattgac agaggaaaaa ataaaagcat tagtagaaat ttgtacagaa 
     121 ttggaaaagg aaggaaaaat ttcaaaaatt gggcctgaaa atccatacaa tactccagta 
     181 ttcgccataa agaaaaaaga cagcactaaa tggagaaaat tagtagattt cagagaactt 
     241 aataagagaa ctcaagactt ctgggaagtt caattaggaa taccacatcc cgcagggtta 
     301 aaaaagaaca aatcagtaac agtactggat gtgggtgatg catatttttc agttccctta 
     361 gatgaagact tcaggaagta tactgcattt accataccta gtacaaacaa tgagacacct 
     421 gggataaggt accagtacaa tgtgcttccg cagggatgga agggatcacc agcaatattc 
     481 caaagtagta tgacaaaaat cttagagcct tttagaaaac aaaatccaga tatagttatc 
     541 tatcaatacg tggatgattt gtatgtagga tctgacttag aaatagggca gcatagagca 
     601 aaaatagagg aactgagaca acatttgttg aagtggggat tttacacacc agacaaaaaa 
     661 catcagaaag aacctccatt cctttggatg ggttatgaac tccatcctga taaatggaca 
     721 gtacagccta tagtgctgcc agaaaaggac agctggactg tcaatgacat acagaagtta 
     781 gtgggaaaat taaattgggc magtcagatt tacccaggga ttaaagtaaa gcaattatgt 
     841 aaactcctta ggggaaccaa agcactaaca gaagtagtac ctckaacaaa agaagcagag 
     901 ctagaactg
//
last modified: Tue May 31 10:56 2022


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