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LOCUS AY275731 992 bp RNA linear VRL 08-NOV-2006
DEFINITION HIV-1 isolate 026PR_RT from Brazil pol protein (pol) gene, partial
cds
ACCESSION AY275731
VERSION AY275731.1 GI:34595788
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 992)
Show all sequences for reference 1
AUTHORS Santos,A.F., Sousa,T.M., Soares,E.A., Sanabani,S., Martinez,A.M.,
Sprinz,E., Silveira,J., Sabino,E.C., Tanuri,A. and Soares,M.A.
TITLE Characterization of a new circulating recombinant form comprising
HIV-1 subtypes C and B in southern Brazil
JOURNAL AIDS 20 (16), 2011-2019 (2006)
PUBMED 17053347
REFERENCE 2 (bases 1 to 992)
Show all sequences for reference 2
AUTHORS Soares,E.A.J.M., Santos,R.P., Pellegrini,J.A., Sprinz,E., Tanuri,A.
and Soares,M.A.
TITLE Direct Submission
JOURNAL Submitted (15-APR-2003) Genetica, Universidade Federal do Rio de
Janeiro, CCS Bloco A - sala A2-121 - Cidade Universitaria - Ilha do
Fundao, Rio de Janeiro, RJ 21944-970, Brazil
REFERENCE 3
Show all sequences for reference 3
AUTHORS Soares,E.A., Santos,R.P., Pellegrini,J.A., Sprinz,E., Tanuri,A. and
Soares,M.A.
TITLE Epidemiologic and molecular characterization of human
immunodeficiency virus type 1 in southern Brazil.
JOURNAL J. Acquir. Immune Defic. Syndr. 34 (5), 520-6 (2003)
PUBMED 14657764
REFERENCE 4
Show all sequences for reference 4
AUTHORS Soares,E.A.J.M., Santos,A.F.A., Sousa,T.M., Sprinz,E.,
Martinez,A.M.B., Silveira,J., Tanuri,A. and Soares,M.A.
TITLE Differential drug resistance acquisition in HIV-1 of subtypes B and
C.
JOURNAL PLoS. ONE.. 2(1); e730 (2007)
PUBMED 17710130
FEATURES Location/Qualifiers
source 1..992
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="026PR_RT"
/isolation_source="patient 026"
/db_xref="taxon:11676"
/country="Brazil"
gene <1..>992
/gene="pol"
CDS <1..>992
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AAQ76616.1"
/db_xref="GI:34595789"
/translation="PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKP
KMIGGIGGFIKVRQYDQIPIEICGKKAIGTVLIGPTPVNIIGRNLLTQMGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPSGLKKKKSVTVLDVGDAYFSVP
LYEDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPE
IVIYQYMDDLYVGSDLEIGQHRAKIEELREHLLRWGFTTPDKKHQKEPPFLWMG"
BASE COUNT 395 a 161 c 203 g 233 t
ORIGIN
1 cctcaaatca ctctttggca acgacccctc gtcacaataa agataggggg gcaactaaag
61 gaagctctat tagatacagg agcagatgat acagtattag aagaaatgag tttgccagga
121 agatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtatgat
181 cagataccca tagaaatctg cggaaagaaa gctataggta cagtattaat aggacctaca
241 cctgtcaaca taattggaag aaatctgttg actcagatgg gatgcacttt aaattttccc
301 attagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaagtc
361 aaacaatggc cattgacaga agaaaaaata aaagcattag tagaaatctg tacagaaatg
421 gaaaaggaag gaaaaatttc aaaaattggg cctgaaaacc catacaatac tccagtattt
481 gctataaaga aaaaagacag tactaaatgg agaaaattag tagatttcag agaacttaat
541 aagagaactc aagacttctg ggaagttcaa ttaggaatac cacatccctc agggttaaaa
601 aagaaaaaat cagtaacagt actggatgtg ggtgatgcat atttttcagt tcccttgtat
661 gaagacttca ggaagtatac tgcatttacc atacctagta caaacaatga gacaccaggg
721 attagatatc aatacaatgt gcttccacag ggatggaaag gatcaccagc aatattccaa
781 agtagcatga caaaaatctt agagcctttt agaaaacaaa atccagaaat agttatctat
841 caatatatgg atgacttgta tgtaggatct gacttagaaa tagggcaaca tagagcaaaa
901 atagaggaat taagagaaca tctgttgagg tggggattta ccacaccaga caaaaaacat
961 cagaaagaac ctccattcct ttggatgggt ta
//
last modified: Tue May 31 10:56 2022