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LOCUS	    AY275731		     992 bp    RNA     linear	VRL 08-NOV-2006
DEFINITION  HIV-1 isolate 026PR_RT from Brazil pol protein (pol) gene, partial
	    cds
ACCESSION   AY275731
VERSION     AY275731.1 GI:34595788
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 992)
            Show all sequences for reference 1
  AUTHORS   Santos,A.F., Sousa,T.M., Soares,E.A., Sanabani,S., Martinez,A.M.,
	    Sprinz,E., Silveira,J., Sabino,E.C., Tanuri,A. and Soares,M.A.
  TITLE     Characterization of a new circulating recombinant form comprising
	    HIV-1 subtypes C and B in southern Brazil
  JOURNAL   AIDS 20 (16), 2011-2019 (2006)
  PUBMED    17053347
REFERENCE   2 (bases 1 to 992)
            Show all sequences for reference 2
  AUTHORS   Soares,E.A.J.M., Santos,R.P., Pellegrini,J.A., Sprinz,E., Tanuri,A.
	    and Soares,M.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-APR-2003) Genetica, Universidade Federal do Rio de
	    Janeiro, CCS Bloco A - sala A2-121 - Cidade Universitaria - Ilha do
	    Fundao, Rio de Janeiro, RJ 21944-970, Brazil
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Soares,E.A., Santos,R.P., Pellegrini,J.A., Sprinz,E., Tanuri,A. and
	    Soares,M.A.
  TITLE     Epidemiologic and molecular characterization of human
	    immunodeficiency virus type 1 in southern Brazil.
  JOURNAL   J. Acquir. Immune Defic. Syndr. 34 (5), 520-6 (2003)
  PUBMED    14657764
REFERENCE   4
            Show all sequences for reference 4
  AUTHORS   Soares,E.A.J.M., Santos,A.F.A., Sousa,T.M., Sprinz,E.,
	    Martinez,A.M.B., Silveira,J., Tanuri,A. and Soares,M.A.
  TITLE     Differential drug resistance acquisition in HIV-1 of subtypes B and
	    C.
  JOURNAL   PLoS. ONE.. 2(1); e730 (2007)
  PUBMED    17710130
FEATURES             Location/Qualifiers
     source	     1..992
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="026PR_RT"
		     /isolation_source="patient 026"
		     /db_xref="taxon:11676"
		     /country="Brazil"
     gene	     <1..>992
		     /gene="pol"
     CDS	     <1..>992
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AAQ76616.1"
		     /db_xref="GI:34595789"
		     /translation="PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKP
		     KMIGGIGGFIKVRQYDQIPIEICGKKAIGTVLIGPTPVNIIGRNLLTQMGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPSGLKKKKSVTVLDVGDAYFSVP
		     LYEDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPE
		     IVIYQYMDDLYVGSDLEIGQHRAKIEELREHLLRWGFTTPDKKHQKEPPFLWMG"
BASE COUNT	395 a	 161 c	  203 g    233 t
ORIGIN
       1 cctcaaatca ctctttggca acgacccctc gtcacaataa agataggggg gcaactaaag 
      61 gaagctctat tagatacagg agcagatgat acagtattag aagaaatgag tttgccagga 
     121 agatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtatgat 
     181 cagataccca tagaaatctg cggaaagaaa gctataggta cagtattaat aggacctaca 
     241 cctgtcaaca taattggaag aaatctgttg actcagatgg gatgcacttt aaattttccc 
     301 attagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaagtc 
     361 aaacaatggc cattgacaga agaaaaaata aaagcattag tagaaatctg tacagaaatg 
     421 gaaaaggaag gaaaaatttc aaaaattggg cctgaaaacc catacaatac tccagtattt 
     481 gctataaaga aaaaagacag tactaaatgg agaaaattag tagatttcag agaacttaat 
     541 aagagaactc aagacttctg ggaagttcaa ttaggaatac cacatccctc agggttaaaa 
     601 aagaaaaaat cagtaacagt actggatgtg ggtgatgcat atttttcagt tcccttgtat 
     661 gaagacttca ggaagtatac tgcatttacc atacctagta caaacaatga gacaccaggg 
     721 attagatatc aatacaatgt gcttccacag ggatggaaag gatcaccagc aatattccaa 
     781 agtagcatga caaaaatctt agagcctttt agaaaacaaa atccagaaat agttatctat 
     841 caatatatgg atgacttgta tgtaggatct gacttagaaa tagggcaaca tagagcaaaa 
     901 atagaggaat taagagaaca tctgttgagg tggggattta ccacaccaga caaaaaacat 
     961 cagaaagaac ctccattcct ttggatgggt ta
//
last modified: Tue May 31 10:56 2022


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