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LOCUS	    AY275727		     971 bp    RNA     linear	VRL 08-NOV-2006
DEFINITION  HIV-1 isolate 019PR_RT from Brazil pol protein (pol) gene, partial
	    cds
ACCESSION   AY275727
VERSION     AY275727.1 GI:34595780
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 971)
            Show all sequences for reference 1
  AUTHORS   Santos,A.F., Sousa,T.M., Soares,E.A., Sanabani,S., Martinez,A.M.,
	    Sprinz,E., Silveira,J., Sabino,E.C., Tanuri,A. and Soares,M.A.
  TITLE     Characterization of a new circulating recombinant form comprising
	    HIV-1 subtypes C and B in southern Brazil
  JOURNAL   AIDS 20 (16), 2011-2019 (2006)
  PUBMED    17053347
REFERENCE   2 (bases 1 to 971)
            Show all sequences for reference 2
  AUTHORS   Soares,E.A.J.M., Santos,R.P., Pellegrini,J.A., Sprinz,E., Tanuri,A.
	    and Soares,M.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-APR-2003) Genetica, Universidade Federal do Rio de
	    Janeiro, CCS Bloco A - sala A2-121 - Cidade Universitaria - Ilha do
	    Fundao, Rio de Janeiro, RJ 21944-970, Brazil
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Soares,E.A., Santos,R.P., Pellegrini,J.A., Sprinz,E., Tanuri,A. and
	    Soares,M.A.
  TITLE     Epidemiologic and molecular characterization of human
	    immunodeficiency virus type 1 in southern Brazil.
  JOURNAL   J. Acquir. Immune Defic. Syndr. 34 (5), 520-6 (2003)
  PUBMED    14657764
REFERENCE   4
            Show all sequences for reference 4
  AUTHORS   Soares,E.A.J.M., Santos,A.F.A., Sousa,T.M., Sprinz,E.,
	    Martinez,A.M.B., Silveira,J., Tanuri,A. and Soares,M.A.
  TITLE     Differential drug resistance acquisition in HIV-1 of subtypes B and
	    C.
  JOURNAL   PLoS. ONE.. 2(1); e730 (2007)
  PUBMED    17710130
FEATURES             Location/Qualifiers
     source	     1..971
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="019PR_RT"
		     /isolation_source="patient 019"
		     /db_xref="taxon:11676"
		     /country="Brazil"
     gene	     <1..>971
		     /gene="pol"
     CDS	     <1..>971
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AAQ76612.1"
		     /db_xref="GI:34595781"
		     /translation="PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEDMNLPGRWKP
		     KMIGGIGGFIKVRQYDQIPMEICGKKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPD
		     IIIYQYMDDLYVGSDLEIEQHRAKVEGLRQHLFRWGFTTPDKKHQKEP"
BASE COUNT	385 a	 161 c	  203 g    222 t
ORIGIN
       1 cctcaaatca ctctttggca acgacccctc gtcacaataa agataggggg gcaactaaag 
      61 gaagctctat tagatacagg agcagatgat acagtattag aagacatgaa tttgccagga 
     121 aggtggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtatgat 
     181 cagataccca tggaaatctg tgggaaaaag gctataggta cagtattagt aggacctaca 
     241 cctgtcaaca taattggaag aaatttgttg actcagattg gctgcacttt aaattttccc 
     301 atcagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggacgg cccaaaagtt 
     361 aaacaatggc cattaacaga agaaaaaata aaagcattag tagaaatttg tacagaaatg 
     421 gaaaaggaag gaaaaatttc aaaaataggg cctgaaaatc catacaatac tccagtattt 
     481 gccataaaga aaaaggacag tactaaatgg agaaaattag tagatttcag agaacttaat 
     541 aagagaactc aagacttctg ggaagttcaa ttaggaatac cacatcccgc agggttaaaa 
     601 aagaaaaaat cagtaacagt actggatgtg ggtgatgcat atttttcagt tcccttagat 
     661 aaagacttca ggaagtatac ggcatttacc atacctagta taaacaatga aacgccagga 
     721 attagatatc agtacaatgt gcttccacag ggatggaaag gatcaccagc aatattccaa 
     781 agtagcatga caaaaatctt agagcctttt agaaaacaaa atccagacat aatcatctat 
     841 caatacatgg atgacttgta tgtaggatct gacttagaaa tagagcagca tagagcaaag 
     901 gtagagggac tgagacaaca tctgtttagg tgggggttta ccacaccaga caaaaaacat 
     961 cagaaagaac c
//
last modified: Tue May 31 10:56 2022


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