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LOCUS AY275727 971 bp RNA linear VRL 08-NOV-2006
DEFINITION HIV-1 isolate 019PR_RT from Brazil pol protein (pol) gene, partial
cds
ACCESSION AY275727
VERSION AY275727.1 GI:34595780
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 971)
Show all sequences for reference 1
AUTHORS Santos,A.F., Sousa,T.M., Soares,E.A., Sanabani,S., Martinez,A.M.,
Sprinz,E., Silveira,J., Sabino,E.C., Tanuri,A. and Soares,M.A.
TITLE Characterization of a new circulating recombinant form comprising
HIV-1 subtypes C and B in southern Brazil
JOURNAL AIDS 20 (16), 2011-2019 (2006)
PUBMED 17053347
REFERENCE 2 (bases 1 to 971)
Show all sequences for reference 2
AUTHORS Soares,E.A.J.M., Santos,R.P., Pellegrini,J.A., Sprinz,E., Tanuri,A.
and Soares,M.A.
TITLE Direct Submission
JOURNAL Submitted (15-APR-2003) Genetica, Universidade Federal do Rio de
Janeiro, CCS Bloco A - sala A2-121 - Cidade Universitaria - Ilha do
Fundao, Rio de Janeiro, RJ 21944-970, Brazil
REFERENCE 3
Show all sequences for reference 3
AUTHORS Soares,E.A., Santos,R.P., Pellegrini,J.A., Sprinz,E., Tanuri,A. and
Soares,M.A.
TITLE Epidemiologic and molecular characterization of human
immunodeficiency virus type 1 in southern Brazil.
JOURNAL J. Acquir. Immune Defic. Syndr. 34 (5), 520-6 (2003)
PUBMED 14657764
REFERENCE 4
Show all sequences for reference 4
AUTHORS Soares,E.A.J.M., Santos,A.F.A., Sousa,T.M., Sprinz,E.,
Martinez,A.M.B., Silveira,J., Tanuri,A. and Soares,M.A.
TITLE Differential drug resistance acquisition in HIV-1 of subtypes B and
C.
JOURNAL PLoS. ONE.. 2(1); e730 (2007)
PUBMED 17710130
FEATURES Location/Qualifiers
source 1..971
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="019PR_RT"
/isolation_source="patient 019"
/db_xref="taxon:11676"
/country="Brazil"
gene <1..>971
/gene="pol"
CDS <1..>971
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AAQ76612.1"
/db_xref="GI:34595781"
/translation="PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEDMNLPGRWKP
KMIGGIGGFIKVRQYDQIPMEICGKKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPD
IIIYQYMDDLYVGSDLEIEQHRAKVEGLRQHLFRWGFTTPDKKHQKEP"
BASE COUNT 385 a 161 c 203 g 222 t
ORIGIN
1 cctcaaatca ctctttggca acgacccctc gtcacaataa agataggggg gcaactaaag
61 gaagctctat tagatacagg agcagatgat acagtattag aagacatgaa tttgccagga
121 aggtggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtatgat
181 cagataccca tggaaatctg tgggaaaaag gctataggta cagtattagt aggacctaca
241 cctgtcaaca taattggaag aaatttgttg actcagattg gctgcacttt aaattttccc
301 atcagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggacgg cccaaaagtt
361 aaacaatggc cattaacaga agaaaaaata aaagcattag tagaaatttg tacagaaatg
421 gaaaaggaag gaaaaatttc aaaaataggg cctgaaaatc catacaatac tccagtattt
481 gccataaaga aaaaggacag tactaaatgg agaaaattag tagatttcag agaacttaat
541 aagagaactc aagacttctg ggaagttcaa ttaggaatac cacatcccgc agggttaaaa
601 aagaaaaaat cagtaacagt actggatgtg ggtgatgcat atttttcagt tcccttagat
661 aaagacttca ggaagtatac ggcatttacc atacctagta taaacaatga aacgccagga
721 attagatatc agtacaatgt gcttccacag ggatggaaag gatcaccagc aatattccaa
781 agtagcatga caaaaatctt agagcctttt agaaaacaaa atccagacat aatcatctat
841 caatacatgg atgacttgta tgtaggatct gacttagaaa tagagcagca tagagcaaag
901 gtagagggac tgagacaaca tctgtttagg tgggggttta ccacaccaga caaaaaacat
961 cagaaagaac c
//
last modified: Tue May 31 10:56 2022