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LOCUS AY223739 2589 bp RNA linear VRL 11-JUN-2003
DEFINITION HIV-1 clone BORI556-68 envelope glycoprotein (env) gene, complete
cds
ACCESSION AY223739
VERSION AY223739.1 GI:31581878
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2589)
Show all sequences for reference 1
AUTHORS Wei,X., Decker,J.M., Wang,S., Hui,H., Kappes,J.C., Wu,X.,
Salazar-Gonzalez,J.F., Salazar,M.G., Kilby,J.M., Saag,M.S.,
Komarova,N.L., Nowak,M.A., Hahn,B.H., Kwong,P.D. and Shaw,G.M.
TITLE Antibody neutralization and escape by HIV-1
JOURNAL Nature 422 (6929), 307-312 (2003)
PUBMED 12646921
REFERENCE 2 (bases 1 to 2589)
Show all sequences for reference 2
AUTHORS Wei,X. and Shaw,G.M.
TITLE Direct Submission
JOURNAL Submitted (22-JAN-2003) Medicine, HHMI, University of Alabama at
Birmingham, 720 South 20th Street, Kaul 816, Birmingham, AL
35294-0024, USA
FEATURES Location/Qualifiers
source 1..2589
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolation_source="plasma from patient BORI"
/db_xref="taxon:11676"
/clone="BORI556-68"
/note="clones are labeled as follows: BORIxxx-yyy, where
xxx indicate the number of days after onset of symptoms
and yyy the clone number"
gene 1..2589
/gene="env"
CDS 1..2589
/gene="env"
/note="gp160"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="AAP57339.1"
/db_xref="GI:31581879"
/translation="MRAKEIRKNCQRLWRWGTMLLGMLMICSAAGNLWVTVYYGVPVW
KEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEVVLENVTENFNMWKNNMVEQ
MHEDIISLWDQSLKPCVKLTPLCVTLNCTDHLKNATNTTSIEEREMKGEIKNCSFNVT
TSIRDKVQKEYALFYKLDVVPIDNDNDNTSYRLISCNTSVITQACPKVTFEPIPIHYC
TPAGFAILKCKDKKFSGTGLCENVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSEN
FTNNAKTIIVQLNETVEINCTRPNNNTRKGIHIGPGRTFYTTGDIIGNIRQAHCNLSR
TKWEDTLKRIVTKLGEQYGNNKTIVFNHSSGGDPEIIMHSFNCGGEFFYCNSTQLFNS
TWNFNGTWNKNFTNTWNNTEGTNDTITLPCRIKQIINMWQEVGKAMYAPPIRGQIRCL
SNITGLLLTRDGGHNENKTTEIFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTKAKR
RVVQREKRAVGALGAMFLGFLGAAGSTMGAASVALTVQARQLLSGIVQQQNNLLRAIE
AQQHLLQLTVWGIKQLQARVLAVERYLMDQQLLGMWGCSGKLICTTTVPWNTSWSNKS
LDDIWHNMTWMQWEREIDNYTSLIYTLIEESHNQQEKNEQELLELGKWDSLWNWLNIT
NWLWYIKIFIMIVGGLIGLRIVFIILSVVNRVRQGYSPLSFQTRLPVPREPDRPEGTE
EEGGEKDRGRSGRLVDGFLALIWDDLRSLFLFSYHRLRDLLLIVARIVELLGRRGWEA
LKYWWNILQYWSQELKNSAVSLLNATAIAVAEGTDRVIEVLQRIYRAFLHIPRRIRQG
LERALL"
BASE COUNT 901 a 435 c 616 g 637 t
ORIGIN
1 atgagagcga aggagatcag gaagaattgt cagcgcttgt ggagatgggg caccatgctc
61 cttgggatgt tgatgatctg tagtgctgca ggcaatttgt gggtgacagt ctattatggg
121 gtacctgtgt ggaaagaggc aaccaccact ctattttgtg catcagatgc taaagcatat
181 gatacagagg tacataatgt ttgggccaca catgcctgtg tacccacaga ccccaaccca
241 caagaagtag tactggaaaa tgtgacagaa aattttaaca tgtggaaaaa taacatggta
301 gaacagatgc atgaggatat aatcagttta tgggatcaaa gcctaaagcc atgtgtaaaa
361 ctaactccac tctgtgttac tttaaattgc actgatcatt tgaagaacgc tactaatacc
421 actagtattg aggagagaga aatgaaagga gaaataaaaa actgctcttt caatgtcacc
481 acaagcataa gagataaggt gcagaaagaa tatgcacttt tttataaact tgatgtagta
541 ccaatagata atgataatga taatactagc tataggttga taagttgtaa tacctcagtc
601 attacacagg cctgtccaaa ggtaaccttt gagccaattc ccatacatta ttgtaccccg
661 gctggttttg caattctaaa gtgtaaagat aagaagttca gtggaacagg actatgtgaa
721 aatgtcagca cagtacaatg tacacatgga attagaccag tagtgtcaac tcaactgttg
781 ttaaatggca gtctagcaga agaagaggta gtaattagat ctgaaaattt tacgaacaat
841 gctaaaacca taatagtaca gctgaatgaa actgtagaaa ttaattgtac aagacccaac
901 aacaatacaa gaaaaggtat acatatagga ccagggagaa cattttatac aacaggagac
961 ataataggaa atataaggca agcacattgt aaccttagta gaacaaaatg ggaagacact
1021 ttaaaaagga tagtcacaaa attaggagaa caatatggga ataataaaac aatagtcttt
1081 aatcactcct caggagggga cccagaaatt ataatgcaca gttttaattg tggaggggaa
1141 tttttctact gtaattcaac acaactgttt aatagtactt ggaattttaa tggtacttgg
1201 aataagaatt ttactaatac ttggaataat actgaaggga caaatgacac aatcacactc
1261 ccatgcagaa taaaacaaat tataaacatg tggcaggaag taggaaaagc aatgtatgcc
1321 cctcccatca gaggacaaat tagatgttta tctaatatta cagggctgct attaacaaga
1381 gatggtgggc ataatgagaa caagaccact gagatcttca gacctggagg gggagatatg
1441 agggacaatt ggagaagtga actatacaaa tataaagtag taaaaattga accattagga
1501 gtagcaccta ccaaggcaaa gagaagagtg gtgcaaagag aaaaaagagc agtgggagcg
1561 ctaggagcta tgttccttgg gttcttggga gcagcaggaa gcactatggg cgcagcgtca
1621 gtggcgctga cggtacaggc caggcaatta ttgtctggta tagtgcaaca gcagaacaat
1681 ttgctgaggg ctattgaggc gcaacagcat ctgttgcaac tcacagtctg gggcatcaag
1741 cagctccagg caagagtcct ggctgtggaa agatacctaa tggatcaaca gctcctaggg
1801 atgtggggtt gctctggaaa actcatttgc accactactg tgccttggaa tactagttgg
1861 agtaataaat ctctggatga tatttggcat aacatgacct ggatgcagtg ggaaagagag
1921 attgacaatt acacaagctt aatatacacc ttaattgaag aatcgcacaa ccaacaagaa
1981 aagaatgaac aagaactatt ggagttagga aaatgggaca gtttgtggaa ttggcttaac
2041 ataacaaatt ggctgtggta tataaaaata ttcataatga tagtaggagg cttgataggt
2101 ttaagaatag tttttattat actttctgta gtgaatagag ttaggcaggg atactcacca
2161 ttatcatttc agacccgcct cccagtcccg agggaacccg acaggcccga aggaacagaa
2221 gaagaaggtg gagagaaaga cagaggcaga tccggacgat tagtggatgg attcttagca
2281 cttatctggg acgacctgcg gagcctgttc ctcttcagct accaccgctt gagagactta
2341 ctcttgattg tagcgaggat tgtggaactt ctgggacgca gggggtggga agctctcaaa
2401 tattggtgga acatcttgca gtattggagt caggaactaa agaatagtgc tgttagcttg
2461 ctcaatgcca cagctatcgc agtagctgag gggacagata gggttataga agtattacaa
2521 agaatttata gagcttttct ccacatacct agaagaataa gacagggcct cgaaagggct
2581 ttgttataa
//
last modified: Tue May 31 10:56 2022