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LOCUS	    AY223739		    2589 bp    RNA     linear	VRL 11-JUN-2003
DEFINITION  HIV-1 clone BORI556-68 envelope glycoprotein (env) gene, complete
	    cds
ACCESSION   AY223739
VERSION     AY223739.1 GI:31581878
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2589)
            Show all sequences for reference 1
  AUTHORS   Wei,X., Decker,J.M., Wang,S., Hui,H., Kappes,J.C., Wu,X.,
	    Salazar-Gonzalez,J.F., Salazar,M.G., Kilby,J.M., Saag,M.S.,
	    Komarova,N.L., Nowak,M.A., Hahn,B.H., Kwong,P.D. and Shaw,G.M.
  TITLE     Antibody neutralization and escape by HIV-1
  JOURNAL   Nature 422 (6929), 307-312 (2003)
  PUBMED    12646921
REFERENCE   2 (bases 1 to 2589)
            Show all sequences for reference 2
  AUTHORS   Wei,X. and Shaw,G.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-JAN-2003) Medicine, HHMI, University of Alabama at
	    Birmingham, 720 South 20th Street, Kaul 816, Birmingham, AL
	    35294-0024, USA
FEATURES             Location/Qualifiers
     source	     1..2589
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolation_source="plasma from patient BORI"
		     /db_xref="taxon:11676"
		     /clone="BORI556-68"
		     /note="clones are labeled as follows: BORIxxx-yyy, where
		     xxx indicate the number of days after onset of symptoms
		     and yyy the clone number"
     gene	     1..2589
		     /gene="env"
     CDS	     1..2589
		     /gene="env"
		     /note="gp160"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="AAP57339.1"
		     /db_xref="GI:31581879"
		     /translation="MRAKEIRKNCQRLWRWGTMLLGMLMICSAAGNLWVTVYYGVPVW
		     KEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEVVLENVTENFNMWKNNMVEQ
		     MHEDIISLWDQSLKPCVKLTPLCVTLNCTDHLKNATNTTSIEEREMKGEIKNCSFNVT
		     TSIRDKVQKEYALFYKLDVVPIDNDNDNTSYRLISCNTSVITQACPKVTFEPIPIHYC
		     TPAGFAILKCKDKKFSGTGLCENVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSEN
		     FTNNAKTIIVQLNETVEINCTRPNNNTRKGIHIGPGRTFYTTGDIIGNIRQAHCNLSR
		     TKWEDTLKRIVTKLGEQYGNNKTIVFNHSSGGDPEIIMHSFNCGGEFFYCNSTQLFNS
		     TWNFNGTWNKNFTNTWNNTEGTNDTITLPCRIKQIINMWQEVGKAMYAPPIRGQIRCL
		     SNITGLLLTRDGGHNENKTTEIFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTKAKR
		     RVVQREKRAVGALGAMFLGFLGAAGSTMGAASVALTVQARQLLSGIVQQQNNLLRAIE
		     AQQHLLQLTVWGIKQLQARVLAVERYLMDQQLLGMWGCSGKLICTTTVPWNTSWSNKS
		     LDDIWHNMTWMQWEREIDNYTSLIYTLIEESHNQQEKNEQELLELGKWDSLWNWLNIT
		     NWLWYIKIFIMIVGGLIGLRIVFIILSVVNRVRQGYSPLSFQTRLPVPREPDRPEGTE
		     EEGGEKDRGRSGRLVDGFLALIWDDLRSLFLFSYHRLRDLLLIVARIVELLGRRGWEA
		     LKYWWNILQYWSQELKNSAVSLLNATAIAVAEGTDRVIEVLQRIYRAFLHIPRRIRQG
		     LERALL"
BASE COUNT	901 a	 435 c	  616 g    637 t
ORIGIN
       1 atgagagcga aggagatcag gaagaattgt cagcgcttgt ggagatgggg caccatgctc 
      61 cttgggatgt tgatgatctg tagtgctgca ggcaatttgt gggtgacagt ctattatggg 
     121 gtacctgtgt ggaaagaggc aaccaccact ctattttgtg catcagatgc taaagcatat 
     181 gatacagagg tacataatgt ttgggccaca catgcctgtg tacccacaga ccccaaccca 
     241 caagaagtag tactggaaaa tgtgacagaa aattttaaca tgtggaaaaa taacatggta 
     301 gaacagatgc atgaggatat aatcagttta tgggatcaaa gcctaaagcc atgtgtaaaa 
     361 ctaactccac tctgtgttac tttaaattgc actgatcatt tgaagaacgc tactaatacc 
     421 actagtattg aggagagaga aatgaaagga gaaataaaaa actgctcttt caatgtcacc 
     481 acaagcataa gagataaggt gcagaaagaa tatgcacttt tttataaact tgatgtagta 
     541 ccaatagata atgataatga taatactagc tataggttga taagttgtaa tacctcagtc 
     601 attacacagg cctgtccaaa ggtaaccttt gagccaattc ccatacatta ttgtaccccg 
     661 gctggttttg caattctaaa gtgtaaagat aagaagttca gtggaacagg actatgtgaa 
     721 aatgtcagca cagtacaatg tacacatgga attagaccag tagtgtcaac tcaactgttg 
     781 ttaaatggca gtctagcaga agaagaggta gtaattagat ctgaaaattt tacgaacaat 
     841 gctaaaacca taatagtaca gctgaatgaa actgtagaaa ttaattgtac aagacccaac 
     901 aacaatacaa gaaaaggtat acatatagga ccagggagaa cattttatac aacaggagac 
     961 ataataggaa atataaggca agcacattgt aaccttagta gaacaaaatg ggaagacact 
    1021 ttaaaaagga tagtcacaaa attaggagaa caatatggga ataataaaac aatagtcttt 
    1081 aatcactcct caggagggga cccagaaatt ataatgcaca gttttaattg tggaggggaa 
    1141 tttttctact gtaattcaac acaactgttt aatagtactt ggaattttaa tggtacttgg 
    1201 aataagaatt ttactaatac ttggaataat actgaaggga caaatgacac aatcacactc 
    1261 ccatgcagaa taaaacaaat tataaacatg tggcaggaag taggaaaagc aatgtatgcc 
    1321 cctcccatca gaggacaaat tagatgttta tctaatatta cagggctgct attaacaaga 
    1381 gatggtgggc ataatgagaa caagaccact gagatcttca gacctggagg gggagatatg 
    1441 agggacaatt ggagaagtga actatacaaa tataaagtag taaaaattga accattagga 
    1501 gtagcaccta ccaaggcaaa gagaagagtg gtgcaaagag aaaaaagagc agtgggagcg 
    1561 ctaggagcta tgttccttgg gttcttggga gcagcaggaa gcactatggg cgcagcgtca 
    1621 gtggcgctga cggtacaggc caggcaatta ttgtctggta tagtgcaaca gcagaacaat 
    1681 ttgctgaggg ctattgaggc gcaacagcat ctgttgcaac tcacagtctg gggcatcaag 
    1741 cagctccagg caagagtcct ggctgtggaa agatacctaa tggatcaaca gctcctaggg 
    1801 atgtggggtt gctctggaaa actcatttgc accactactg tgccttggaa tactagttgg 
    1861 agtaataaat ctctggatga tatttggcat aacatgacct ggatgcagtg ggaaagagag 
    1921 attgacaatt acacaagctt aatatacacc ttaattgaag aatcgcacaa ccaacaagaa 
    1981 aagaatgaac aagaactatt ggagttagga aaatgggaca gtttgtggaa ttggcttaac 
    2041 ataacaaatt ggctgtggta tataaaaata ttcataatga tagtaggagg cttgataggt 
    2101 ttaagaatag tttttattat actttctgta gtgaatagag ttaggcaggg atactcacca 
    2161 ttatcatttc agacccgcct cccagtcccg agggaacccg acaggcccga aggaacagaa 
    2221 gaagaaggtg gagagaaaga cagaggcaga tccggacgat tagtggatgg attcttagca 
    2281 cttatctggg acgacctgcg gagcctgttc ctcttcagct accaccgctt gagagactta 
    2341 ctcttgattg tagcgaggat tgtggaactt ctgggacgca gggggtggga agctctcaaa 
    2401 tattggtgga acatcttgca gtattggagt caggaactaa agaatagtgc tgttagcttg 
    2461 ctcaatgcca cagctatcgc agtagctgag gggacagata gggttataga agtattacaa 
    2521 agaatttata gagcttttct ccacatacct agaagaataa gacagggcct cgaaagggct 
    2581 ttgttataa
//
last modified: Tue May 31 10:56 2022


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