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LOCUS	    AY206652		    1488 bp    RNA     linear	VRL 27-JUN-2003
DEFINITION  HIV-1 from USA patient R3 gag protein (gag) gene, complete cds
ACCESSION   AY206652
VERSION     AY206652.1 GI:29119670
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1488)
            Show all sequences for reference 1
  AUTHORS   Simon,V., Padte,N., Murray,D., Vanderhoeven,J., Wrin,T., Parkin,N.,
	    Di Mascio,M. and Markowitz,M.
  TITLE     Infectivity and Replication Capacity of Drug-Resistant Human
	    Immunodeficiency Virus Type 1 Variants Isolated during Primary
	    Infection
  JOURNAL   J. Virol. 77 (14), 7736-7745 (2003)
  PUBMED    12829813
REFERENCE   2 (bases 1 to 1488)
            Show all sequences for reference 2
  AUTHORS   Simon,V., Padte,N., Murray,D., Vanderhoeven,J., Wrin,T., Parkin,N.,
	    Di Mascio,M. and Markowitz,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-DEC-2002) Aaron Diamond AIDS Research Center, The
	    Rockefeller University, 455 First Avenue, New York, NY 10016, USA
FEATURES             Location/Qualifiers
     source	     1..1488
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolation_source="newly infected patient R3"
		     /db_xref="taxon:11676"
		     /country="USA: New York, New York City"
     gene	     1..1488
		     /gene="gag"
     CDS	     1..1488
		     /gene="gag"
		     /codon_start="1"
		     /transl_table="1"
		     /product="gag protein"
		     /protein_id="AAO63139.1"
		     /db_xref="GI:29119671"
		     /translation="MGARASVLSGGELDRWEKIRLRPGGKKKYQLKHIVWASRELERF
		     AVNPGLLETSEGCKQILGQLQPSLQTGSEELRSLFNTVAVLYCVHQKIDVKDTKEALD
		     KIEEEKKAQQAAAATGTSSQVSQNYPIVQNLQGQMVHQAISPRTLNAWVKVIEEKAFS
		     PEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPV
		     APGQMRDPRGSDIAGTTSTLQEQIGWMTSNPPIPVGEIYKRWIILGLNKIVRMYSPTS
		     ILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGP
		     GATLEEMMTACQGVGGPGHKARVLAEAMSQMTNSATIMMQKGNFRNQRKPVKCFNCGK
		     EGHIAKNCRAPRKKGCWKCGKEGHQMKDCNERQANFLGKIWPSQKGRPGNFPQSRTEP
		     TAPPAESFRFGEETTAPLQKQEPIDKELYPLASLKSLFGNDPLSQ"
BASE COUNT	541 a	 295 c	  366 g    286 t
ORIGIN
       1 atgggtgcga gagcgtcagt attaagcggg ggagaattag atagatggga aaaaattcgg 
      61 ttaaggccag ggggaaagaa aaagtatcaa ctaaaacata tagtatgggc aagcagggag 
     121 ctagaacgat tcgcagtaaa tcctggcctg ttagaaacat cagaaggctg taaacaaata 
     181 ctgggacaac tacaaccatc ccttcagaca ggatcagaag aactcagatc attatttaat 
     241 acagttgcag tcctctattg tgtacatcaa aagatagatg taaaagacac caaggaagcc 
     301 ttagacaaga tagaggaaga gaaaaaagca cagcaagcag cagctgccac aggaactagc 
     361 agccaagtca gccaaaatta tcctatagtg cagaaccttc aggggcaaat ggtacatcag 
     421 gccatatcac ctagaacttt aaatgcatgg gtaaaagtaa tagaggaaaa ggccttcagc 
     481 ccggaagtaa tacccatgtt ttcagcatta tcagaaggag ccaccccaca agatttaaac 
     541 accatgctaa acacagtggg gggacatcaa gcagccatgc aaatgttaaa agagaccatc 
     601 aatgaggaag ctgcagaatg ggatagattg catccagtgc atgcagggcc tgttgcacca 
     661 ggccagatga gagacccaag gggaagtgac atagcaggaa ctaccagcac ccttcaggaa 
     721 caaataggat ggatgacaag taatccacct atcccagtag gagaaatata taaaagatgg 
     781 ataatcctgg gattaaataa aatagtaaga atgtatagcc ctaccagcat tctggacata 
     841 agacaagggc caaaggaacc ctttagagac tatgtagacc ggttctataa aactctaaga 
     901 gccgagcaag cttcacagga ggtaaaaaat tggatgacgg aaaccttgtt ggtccagaat 
     961 tcgaacccag attgtaagac tatcttaaaa gcattgggac caggagctac actagaagaa 
    1021 atgatgacag catgtcaggg agtgggggga cctggccata aagcaagagt tttggctgaa 
    1081 gcaatgagcc agatgacaaa ttcagctacc ataatgatgc agaaaggcaa ttttaggaac 
    1141 caaagaaaac ctgttaagtg tttcaattgt ggcaaagaag ggcacatagc caaaaattgc 
    1201 agggccccta gaaaaaaggg ctgttggaaa tgtggaaaag aaggacacca aatgaaagat 
    1261 tgtaatgaaa gacaggctaa ttttttaggg aaaatctggc cttcccagaa ggggaggcca 
    1321 gggaattttc ctcagagcag gacagagcca acagccccac cagcagagag cttcaggttt 
    1381 ggggaagaga caacagctcc ccttcagaag caggagccga tagacaagga actgtatcct 
    1441 ttggcttccc tcaaatcact ctttggcaac gaccccttgt cacagtaa
//
last modified: Tue May 31 10:56 2022


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