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LOCUS AY206652 1488 bp RNA linear VRL 27-JUN-2003
DEFINITION HIV-1 from USA patient R3 gag protein (gag) gene, complete cds
ACCESSION AY206652
VERSION AY206652.1 GI:29119670
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1488)
Show all sequences for reference 1
AUTHORS Simon,V., Padte,N., Murray,D., Vanderhoeven,J., Wrin,T., Parkin,N.,
Di Mascio,M. and Markowitz,M.
TITLE Infectivity and Replication Capacity of Drug-Resistant Human
Immunodeficiency Virus Type 1 Variants Isolated during Primary
Infection
JOURNAL J. Virol. 77 (14), 7736-7745 (2003)
PUBMED 12829813
REFERENCE 2 (bases 1 to 1488)
Show all sequences for reference 2
AUTHORS Simon,V., Padte,N., Murray,D., Vanderhoeven,J., Wrin,T., Parkin,N.,
Di Mascio,M. and Markowitz,M.
TITLE Direct Submission
JOURNAL Submitted (23-DEC-2002) Aaron Diamond AIDS Research Center, The
Rockefeller University, 455 First Avenue, New York, NY 10016, USA
FEATURES Location/Qualifiers
source 1..1488
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolation_source="newly infected patient R3"
/db_xref="taxon:11676"
/country="USA: New York, New York City"
gene 1..1488
/gene="gag"
CDS 1..1488
/gene="gag"
/codon_start="1"
/transl_table="1"
/product="gag protein"
/protein_id="AAO63139.1"
/db_xref="GI:29119671"
/translation="MGARASVLSGGELDRWEKIRLRPGGKKKYQLKHIVWASRELERF
AVNPGLLETSEGCKQILGQLQPSLQTGSEELRSLFNTVAVLYCVHQKIDVKDTKEALD
KIEEEKKAQQAAAATGTSSQVSQNYPIVQNLQGQMVHQAISPRTLNAWVKVIEEKAFS
PEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPV
APGQMRDPRGSDIAGTTSTLQEQIGWMTSNPPIPVGEIYKRWIILGLNKIVRMYSPTS
ILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGP
GATLEEMMTACQGVGGPGHKARVLAEAMSQMTNSATIMMQKGNFRNQRKPVKCFNCGK
EGHIAKNCRAPRKKGCWKCGKEGHQMKDCNERQANFLGKIWPSQKGRPGNFPQSRTEP
TAPPAESFRFGEETTAPLQKQEPIDKELYPLASLKSLFGNDPLSQ"
BASE COUNT 541 a 295 c 366 g 286 t
ORIGIN
1 atgggtgcga gagcgtcagt attaagcggg ggagaattag atagatggga aaaaattcgg
61 ttaaggccag ggggaaagaa aaagtatcaa ctaaaacata tagtatgggc aagcagggag
121 ctagaacgat tcgcagtaaa tcctggcctg ttagaaacat cagaaggctg taaacaaata
181 ctgggacaac tacaaccatc ccttcagaca ggatcagaag aactcagatc attatttaat
241 acagttgcag tcctctattg tgtacatcaa aagatagatg taaaagacac caaggaagcc
301 ttagacaaga tagaggaaga gaaaaaagca cagcaagcag cagctgccac aggaactagc
361 agccaagtca gccaaaatta tcctatagtg cagaaccttc aggggcaaat ggtacatcag
421 gccatatcac ctagaacttt aaatgcatgg gtaaaagtaa tagaggaaaa ggccttcagc
481 ccggaagtaa tacccatgtt ttcagcatta tcagaaggag ccaccccaca agatttaaac
541 accatgctaa acacagtggg gggacatcaa gcagccatgc aaatgttaaa agagaccatc
601 aatgaggaag ctgcagaatg ggatagattg catccagtgc atgcagggcc tgttgcacca
661 ggccagatga gagacccaag gggaagtgac atagcaggaa ctaccagcac ccttcaggaa
721 caaataggat ggatgacaag taatccacct atcccagtag gagaaatata taaaagatgg
781 ataatcctgg gattaaataa aatagtaaga atgtatagcc ctaccagcat tctggacata
841 agacaagggc caaaggaacc ctttagagac tatgtagacc ggttctataa aactctaaga
901 gccgagcaag cttcacagga ggtaaaaaat tggatgacgg aaaccttgtt ggtccagaat
961 tcgaacccag attgtaagac tatcttaaaa gcattgggac caggagctac actagaagaa
1021 atgatgacag catgtcaggg agtgggggga cctggccata aagcaagagt tttggctgaa
1081 gcaatgagcc agatgacaaa ttcagctacc ataatgatgc agaaaggcaa ttttaggaac
1141 caaagaaaac ctgttaagtg tttcaattgt ggcaaagaag ggcacatagc caaaaattgc
1201 agggccccta gaaaaaaggg ctgttggaaa tgtggaaaag aaggacacca aatgaaagat
1261 tgtaatgaaa gacaggctaa ttttttaggg aaaatctggc cttcccagaa ggggaggcca
1321 gggaattttc ctcagagcag gacagagcca acagccccac cagcagagag cttcaggttt
1381 ggggaagaga caacagctcc ccttcagaag caggagccga tagacaagga actgtatcct
1441 ttggcttccc tcaaatcact ctttggcaac gaccccttgt cacagtaa
//
last modified: Tue May 31 10:56 2022