View NCBI entry Download GenBank file Graphics View Download GFF3 File
LOCUS AY161865 410 bp DNA linear VRL 07-JUL-2003
DEFINITION HIV-1 isolate 00PTHSM4 from Portugal envelope glycoprotein (env)
gene, partial cds
ACCESSION AY161865
VERSION AY161865.1 GI:26515851
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 410)
Show all sequences for reference 1
AUTHORS Antunes,R., Figueiredo,S., Bartolo,I., Pinheiro,M., Rosado,L.,
Soares,I., Lourenco,H. and Taveira,N.
TITLE Evaluation of the Clinical Sensitivities of Three Viral Load Assays
with Plasma Samples from a Pediatric Population Predominantly
Infected with Human Immunodeficiency Virus Type 1 Subtype G and BG
Recombinant Forms
JOURNAL J. Clin. Microbiol. 41 (7), 3361-3367 (2003)
PUBMED 12843094
REFERENCE 2 (bases 1 to 410)
Show all sequences for reference 2
AUTHORS Antunes,R., Figueiredo,S., Bartolo,I., Pinheiro,M., Lourenco,H.,
Rosado,L., Soares,I. and Taveira,N.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2002) Centro de Patogenese Molecular, Faculdade
de Farmacia de Lisboa, Avenida das Forcas Armadas, Lisboa 1649-019,
Portugal
FEATURES Location/Qualifiers
source 1..410
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="00PTHSM4"
/db_xref="taxon:11676"
/country="Portugal"
/note="subtype: G"
gene <1..>410
/gene="env"
/gene_synonym="gp120"
CDS <1..>410
/gene="env"
/gene_synonym="gp120"
/note="C2V3 region"
/codon_start="2"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="AAN84441.1"
/db_xref="GI:26515852"
/translation="QCTHGIRPVISTQLLLNGSLTQKEIMIRSENITNNAKTIIVQLN
KAINITCTRPNNNTRKSIRFGPGQAFYATGDIIGDIRQAHCNISGKEWGDMIQNVTKK
LEGVFHKNNITFQPYSGGGLEITHIGFNCRGEFF"
BASE COUNT 169 a 69 c 79 g 93 t
ORIGIN
1 acaatgtaca catggaatta ggccagtgat atcaactcaa ttgctgctaa acggcagttt
61 gacacaaaag gaaataatga ttagatctga aaacatcaca aacaatgcca aaaccataat
121 agtgcagctt aacaaggcta taaacattac gtgtaccaga cccaacaaca atacaagaaa
181 aagtataaga tttggaccag gacaagcgtt ctatgcaaca ggtgacataa taggagatat
241 aagacaagca cattgtaata ttagtggaaa agaatgggga gatatgatac aaaatgtaac
301 taaaaaacta gaaggggtct ttcacaagaa caacataacc tttcaaccat actcaggagg
361 gggcttagaa attacacaca tcggttttaa ttgtagaggg gaatttttct
//
last modified: Tue May 31 10:56 2022