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LOCUS AY156894 775 bp DNA linear VRL 22-OCT-2002
DEFINITION HIV-1 clone V37 from USA envelope glycoprotein (env) gene, partial
cds
ACCESSION AY156894
VERSION AY156894.1 GI:24210257
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 775)
Show all sequences for reference 1
AUTHORS Metzker,M.L., Ansari-Lari,M.A., Liu,X.M., Holder,D.J. and
Gibbs,R.A.
TITLE Quantitation of mixed-base populations of HIV-1 variants by
automated DNA sequencing with BODIPY dye-labeled primers
JOURNAL BioTechniques 25 (3), 446-447 (1998)
PUBMED 9762443
REFERENCE 2 (bases 1 to 775)
Show all sequences for reference 2
AUTHORS Metzker,M.L., Mindell,D.P., Liu,X.M., Ptak,R.G., Gibbs,R.A. and
Hillis,D.M.
TITLE Molecular evidence of HIV-1 transmission in a criminal case.
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (22), 14292-7 (2002)
PUBMED 12388776
REFERENCE 3 (bases 1 to 775)
Show all sequences for reference 3
AUTHORS Metzker,M.L., Liu,X.-M. and Gibbs,R.A.
TITLE Direct Submission
JOURNAL Submitted (27-SEP-2002) Department of Molecular & Human Genetics,
Baylor College of Medicine, One Baylor Plaza, N1409, Houston, TX
77030, USA
COMMENT There are 174 sequences in this group. A control group comprised of
28 individuals includes 26 env and 25 RT sequences taken in 1995.
Patient samples (66) include 51 env and 7 RT from 1995
(BCM,P01-50), 2 env and 6 RT from 1997 (MIC). Victim samples (57)
include 51 env and 2RT from 1995 (BCM,V01-50), and 2 env and 2 RT
from 1997 (MIC). This was a criminal case where a physician
intentionally infected the "victim" by intramuscular injection of
blood from the "patient". Victim was injected August, 1994 and
was seropositive in January, 1995.
FEATURES Location/Qualifiers
source 1..775
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolation_source="whole blood PBMC"
/db_xref="taxon:11676"
/clone="V37"
/country="USA: Lafayette, LA"
gene <1..>775
/gene="env"
CDS <1..>775
/gene="env"
/codon_start="2"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="AAN41621.1"
/db_xref="GI:24210258"
/translation="IRPTVSTQLLLSGSLAEKEVVIRSENFTNNAKTIIVQLKTPVEI
NCTRPNNNTRKSISIGPGRALYTTGDIIGDIRKAYCNISKAKWNDTLSQVVKKLGQQF
NKTTIVFKQSSGGDPEIAMHSFNCGGEFFYCNTTQLFNSTWNITEETNNMEGNNTTIT
LPCRIKQMINMWQEVGKAMYAPPIQGIISCSSNITGLLLTRDGGNGNDTRDNETFRPG
GGDMKDNWRSELYKYKVVKIEPLGVAPTKAKRRVVQREKR"
BASE COUNT 331 a 123 c 157 g 164 t
ORIGIN
1 aattaggcca acagtatcaa ctcaattact gttaagtggc agtctagcag aaaaagaggt
61 agtaattaga tctgaaaatt tcacgaacaa tgctaaaacc ataatagtac agctgaaaac
121 acctgtagaa attaattgta caaggcccaa caacaataca agaaaaagta tatctatagg
181 accagggaga gcactttata caacaggaga cataatagga gatataagaa aagcatattg
241 taacattagt aaagcaaaat ggaatgacac tctaagccag gtagttaaaa aattaggaca
301 acaatttaat aaaacaacaa tagtctttaa gcaatcctca ggaggggacc cagaaattgc
361 aatgcacagt tttaactgtg gaggggaatt tttctactgt aatacaacac aactgtttaa
421 tagtacctgg aatattactg aagaaacaaa taacatggaa ggaaataata caacaatcac
481 actcccatgc agaataaaac aaatgataaa catgtggcag gaggtaggaa aagcaatgta
541 tgccccgccc atccaaggaa taattagctg ctcatcaaat attacagggc tactactaac
601 aagagatggc ggtaatggta atgacaccag agataatgag accttcagac ctggaggagg
661 agatatgaag gacaattgga gaagtgaatt atataaatat aaagtagtaa aaattgaacc
721 attaggagta gcacccacca aggcaaagag aagggtggtg caaagagaaa aaaga
//
last modified: Tue May 31 10:56 2022