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LOCUS	    AY156793		     689 bp    DNA     linear	VRL 22-OCT-2002
DEFINITION  HIV-1 clone LA30.RT from USA reverse transcriptase (pol) gene,
	    partial cds
ACCESSION   AY156793
VERSION     AY156793.1 GI:24210001
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 689)
            Show all sequences for reference 1
  AUTHORS   Metzker,M.L., Mindell,D.P., Liu,X.M., Ptak,R.G., Gibbs,R.A. and
	    Hillis,D.M.
  TITLE     Molecular evidence of HIV-1 transmission in a criminal case.
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 99 (22), 14292-7 (2002)
  PUBMED    12388776
REFERENCE   2 (bases 1 to 689)
            Show all sequences for reference 2
  AUTHORS   Metzker,M.L., Liu,X.-M. and Gibbs,R.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-SEP-2002) Department of Molecular & Human Genetics,
	    Baylor College of Medicine, One Baylor Plaza, N1409, Houston, TX
	    77030, USA
COMMENT     LA02-LA32 include 1 env and 1 RT sequence for each patient, and are
	    the control group used to represent the population of a
	    metropolitan area, Lafayette, LA. There are 174 sequences in this
	    group. A control group comprised of 28 individuals includes 26 env
	    and 25 RT sequences taken in 1995. Patient samples (66) include 51
	    env and 7 RT from 1995 (BCM,P01-50), 2 env and 6 RT from 1997
	    (MIC). Victim samples (57) include 51 env and 2RT from 1995
	    (BCM,V01-50), and 2 env and 2 RT from 1997 (MIC). This was a
	    criminal case where a physician intentionally infected the
	    "victim" by intramuscular injection of blood from the
	    "patient". Victim was injected August, 1994 and was seropositive
	    in January, 1995.
FEATURES             Location/Qualifiers
     source	     1..689
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolation_source="whole blood PBMC"
		     /db_xref="taxon:11676"
		     /clone="LA30.RT"
		     /country="USA: Lafayette, LA"
     gene	     <1..>689
		     /gene="pol"
     CDS	     <1..>689
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="reverse transcriptase"
		     /protein_id="AAN41493.1"
		     /db_xref="GI:24210002"
		     /translation="PISPIDTVPVKLKPGMDGPKVKQWPLTEEKIKALVEICAELEKX
		     GKISKIGPENPYNTPVFAIKKKDXTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKK
		     KKSVTVLDVGDAYFSVPLXEDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIF
		     QCSMTKILEPFRKQNPDIVIYQYVDDLYVGSDLEIEQHRTKIEELRQHLWRWGFYTPD
		     KKHQKEPPFLW"
BASE COUNT	273 a	 117 c	  133 g    153 t     13 other
ORIGIN
       1 cccattagtc ctattgatac tgtaccagta aaattaaagc caggaatgga tggcccaaaa 
      61 gttaaacaat ggccattgac agaagagaaa ataaaagcat tagtagaaat ttgtgcagaa 
     121 ytggaaaagg amggaaaaat ttcaaaaatt gggccwgaaa atccatacaa tactccagta 
     181 tttgccataa agaaaaagga crgtactaaa tggagaaaat tagtagattt cagagaactt 
     241 aacaagagaa ctcaagactt ctgggaagtc caaytaggaa tcccacaccc cgcagggtta 
     301 aaaaagaaaa aatcagtaac agtaytggat gtgggtgatg catatttctc agttccctta 
     361 katgaagact tcagaaaata tactgcattt accataccta gtacaaayaa tgagacwcca 
     421 gggattagat atcagtacaa tgtgctccca cagggatgga aaggatcacc agcaatattc 
     481 cagtgtagca tgacaaaaat cttagagcct tttagaaaac aaaatccaga catagttatc 
     541 tatcaatacg tggatgattt gtatgtagga tctgacttag aaatagaaca gcatagaaca 
     601 aaaatagagg aactragaca acatytrtgg aggtggggat tttacacacc agacaaaaaa 
     661 caycagaaag aacccccatt cctttggat
//
last modified: Tue May 31 10:56 2022


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