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LOCUS AY156793 689 bp DNA linear VRL 22-OCT-2002
DEFINITION HIV-1 clone LA30.RT from USA reverse transcriptase (pol) gene,
partial cds
ACCESSION AY156793
VERSION AY156793.1 GI:24210001
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 689)
Show all sequences for reference 1
AUTHORS Metzker,M.L., Mindell,D.P., Liu,X.M., Ptak,R.G., Gibbs,R.A. and
Hillis,D.M.
TITLE Molecular evidence of HIV-1 transmission in a criminal case.
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (22), 14292-7 (2002)
PUBMED 12388776
REFERENCE 2 (bases 1 to 689)
Show all sequences for reference 2
AUTHORS Metzker,M.L., Liu,X.-M. and Gibbs,R.A.
TITLE Direct Submission
JOURNAL Submitted (27-SEP-2002) Department of Molecular & Human Genetics,
Baylor College of Medicine, One Baylor Plaza, N1409, Houston, TX
77030, USA
COMMENT LA02-LA32 include 1 env and 1 RT sequence for each patient, and are
the control group used to represent the population of a
metropolitan area, Lafayette, LA. There are 174 sequences in this
group. A control group comprised of 28 individuals includes 26 env
and 25 RT sequences taken in 1995. Patient samples (66) include 51
env and 7 RT from 1995 (BCM,P01-50), 2 env and 6 RT from 1997
(MIC). Victim samples (57) include 51 env and 2RT from 1995
(BCM,V01-50), and 2 env and 2 RT from 1997 (MIC). This was a
criminal case where a physician intentionally infected the
"victim" by intramuscular injection of blood from the
"patient". Victim was injected August, 1994 and was seropositive
in January, 1995.
FEATURES Location/Qualifiers
source 1..689
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolation_source="whole blood PBMC"
/db_xref="taxon:11676"
/clone="LA30.RT"
/country="USA: Lafayette, LA"
gene <1..>689
/gene="pol"
CDS <1..>689
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="reverse transcriptase"
/protein_id="AAN41493.1"
/db_xref="GI:24210002"
/translation="PISPIDTVPVKLKPGMDGPKVKQWPLTEEKIKALVEICAELEKX
GKISKIGPENPYNTPVFAIKKKDXTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKK
KKSVTVLDVGDAYFSVPLXEDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIF
QCSMTKILEPFRKQNPDIVIYQYVDDLYVGSDLEIEQHRTKIEELRQHLWRWGFYTPD
KKHQKEPPFLW"
BASE COUNT 273 a 117 c 133 g 153 t 13 other
ORIGIN
1 cccattagtc ctattgatac tgtaccagta aaattaaagc caggaatgga tggcccaaaa
61 gttaaacaat ggccattgac agaagagaaa ataaaagcat tagtagaaat ttgtgcagaa
121 ytggaaaagg amggaaaaat ttcaaaaatt gggccwgaaa atccatacaa tactccagta
181 tttgccataa agaaaaagga crgtactaaa tggagaaaat tagtagattt cagagaactt
241 aacaagagaa ctcaagactt ctgggaagtc caaytaggaa tcccacaccc cgcagggtta
301 aaaaagaaaa aatcagtaac agtaytggat gtgggtgatg catatttctc agttccctta
361 katgaagact tcagaaaata tactgcattt accataccta gtacaaayaa tgagacwcca
421 gggattagat atcagtacaa tgtgctccca cagggatgga aaggatcacc agcaatattc
481 cagtgtagca tgacaaaaat cttagagcct tttagaaaac aaaatccaga catagttatc
541 tatcaatacg tggatgattt gtatgtagga tctgacttag aaatagaaca gcatagaaca
601 aaaatagagg aactragaca acatytrtgg aggtggggat tttacacacc agacaaaaaa
661 caycagaaag aacccccatt cctttggat
//
last modified: Tue May 31 10:56 2022