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LOCUS	    AY133179		     985 bp    DNA     linear	VRL 30-SEP-2002
DEFINITION  HIV-1 isolate C15 clone A2b from USA pol protein (pol) gene,
	    partial cds
ACCESSION   AY133179
VERSION     AY133179.1 GI:23380329
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 985)
            Show all sequences for reference 1
  AUTHORS   Ruff,C.T., Ray,S.C., Kwon,P., Zinn,R., Pendleton,A., Hutton,N.,
	    Ashworth,R., Gange,S., Quinn,T.C., Siliciano,R.F. and Persaud,D.
  TITLE     Persistence of wild-type virus and lack of temporal structure in
	    the latent reservoir for human immunodeficiency virus type 1 in
	    pediatric patients with extensive antiretroviral exposure
  JOURNAL   J. Virol. 76 (18), 9481-9492 (2002)
  PUBMED    12186930
REFERENCE   2 (bases 1 to 985)
            Show all sequences for reference 2
  AUTHORS   Ruff,C.T., Ray,S.C., Kwon,P., Zinn,R., Pendleton,A., Hutton,N.,
	    Ashworth,R., Gange,S., Quinn,T.C., Siliciano,R.F. and Persaud,D.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-JUL-2002) Infectious Diseases, Department of
	    Medicine, Johns Hopkins University School of Medicine, 720 Rutland
	    Avenue, Ross 1049, Baltimore, MD 21205, USA
FEATURES             Location/Qualifiers
     source	     1..985
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="C15"
		     /isolation_source="pediatric patient C15, 35 months of
		     HAART"
		     /db_xref="taxon:11676"
		     /clone="A2b"
		     /country="USA"
     gene	     <1..>985
		     /gene="pol"
     CDS	     <1..>985
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AAN18007.1"
		     /db_xref="GI:23380330"
		     /translation="PQITLWQRPLVEIKIGGQLKEALLDTGADDTVLEEINLPGRWKP
		     KMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLVGPTPANIIGRNLLTQIGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTELETEGKISKTGPENPYNTPVF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPGGLKKKKSVTVLDVGDAYFSVP
		     LDKEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRTQNPD
		     IVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLWKWGFYTPDKKHQKEPPFLW"
BASE COUNT	391 a	 161 c	  201 g    232 t
ORIGIN
       1 cctcagatca ctctttggca acgacccctc gttgaaataa agataggggg gcaactaaag 
      61 gaagctctat tagatacagg agcagatgac acagtattag aagaaataaa tttgccagga 
     121 agatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtatgat 
     181 cagataccca tagaaatctg tggacataaa gctataggta cagtgttagt aggacctaca 
     241 cctgccaaca taattggaag aaatctgttg actcagattg gttgcacttt aaattttccc 
     301 attagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaagtt 
     361 aaacaatggc cattgacaga agaaaaaata aaagcattag tagaaatctg tacagaattg 
     421 gaaacagaag ggaaaatttc aaaaactggg cctgaaaatc catacaatac tccagtattt 
     481 gccataaaga aaaaagacag tactaaatgg agaaaattag tagacttcag agaacttaat 
     541 aagagaactc aagacttctg ggaagttcaa ttaggaatac cacatcctgg agggttaaaa 
     601 aagaaaaaat cagtaacagt actggatgtg ggtgatgcat atttttcagt tcctttagat 
     661 aaagaattca ggaagtatac tgcatttacc atacctagta taaacaatga gacaccaggg 
     721 attagatatc aatacaatgt gcttccacaa ggatggaaag gatcaccagc aatattccaa 
     781 agtagcatga caaaaatctt agagcctttt agaacacaaa atccagacat agtgatctat 
     841 caatacatgg atgatttgta tgtaggatct gacttagaaa tagggcagca tagaacaaaa 
     901 atagaggaac tgagacaaca tctgtggaag tggggatttt acacaccaga caaaaaacat 
     961 cagaaagaac ctccattcct ttgga
//
last modified: Tue May 31 10:56 2022


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