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LOCUS	    AY133155		     985 bp    DNA     linear	VRL 30-SEP-2002
DEFINITION  HIV-1 isolate C22 clone 5.3 from USA pol protein (pol) gene,
	    partial cds
ACCESSION   AY133155
VERSION     AY133155.1 GI:23380283
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 985)
            Show all sequences for reference 1
  AUTHORS   Ruff,C.T., Ray,S.C., Kwon,P., Zinn,R., Pendleton,A., Hutton,N.,
	    Ashworth,R., Gange,S., Quinn,T.C., Siliciano,R.F. and Persaud,D.
  TITLE     Persistence of wild-type virus and lack of temporal structure in
	    the latent reservoir for human immunodeficiency virus type 1 in
	    pediatric patients with extensive antiretroviral exposure
  JOURNAL   J. Virol. 76 (18), 9481-9492 (2002)
  PUBMED    12186930
REFERENCE   2 (bases 1 to 985)
            Show all sequences for reference 2
  AUTHORS   Ruff,C.T., Ray,S.C., Kwon,P., Zinn,R., Pendleton,A., Hutton,N.,
	    Ashworth,R., Gange,S., Quinn,T.C., Siliciano,R.F. and Persaud,D.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-JUL-2002) Infectious Diseases, Department of
	    Medicine, Johns Hopkins University School of Medicine, 720 Rutland
	    Avenue, Ross 1049, Baltimore, MD 21205, USA
FEATURES             Location/Qualifiers
     source	     1..985
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="C22"
		     /isolation_source="pediatric patient C22, 18 months of
		     HAART"
		     /db_xref="taxon:11676"
		     /clone="5.3"
		     /country="USA"
     gene	     <1..>985
		     /gene="pol"
     CDS	     <1..>985
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AAN17985.1"
		     /db_xref="GI:23380284"
		     /translation="PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEDMNLPGRWKP
		     KMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQIGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISRIGPENPYNTPVF
		     AIKKKDSTKWRKLIDFRELNKRTQDFWEVQLGIPHPGGLKKKKSVTVLDVGDAYFSVP
		     LDKDFRKYTAFTIPSINNETPGVRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPD
		     IVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLKWGFYTPDKKHQKEPPFLW"
BASE COUNT	387 a	 160 c	  203 g    235 t
ORIGIN
       1 cctcagatca ctctttggca acgacccctc gtcacaataa agataggggg gcaactaaag 
      61 gaagctctat tagatacagg agcagatgat acagtattag aagacatgaa tttgccagga 
     121 agatggaagc caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtatgat 
     181 cagataccca tagaaatctg tggacataag gctataggta cagtattaat aggacctaca 
     241 cctgtcaaca taattggaag aaatctgttg actcagattg gttgcacttt aaattttccc 
     301 attagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaagtt 
     361 aaacaatggc cattgacaga agaaaaaata aaagcattag tagaaatttg tacagaaatg 
     421 gaaaaggaag ggaaaatttc aagaattggg cctgaaaatc catataatac tccagtattt 
     481 gccataaaga aaaaggacag tactaaatgg agaaaattaa tagactttag agaacttaat 
     541 aaaagaactc aagacttctg ggaggttcaa ttaggaatac cacatcccgg agggttaaag 
     601 aagaaaaaat cagtaacagt actggatgtg ggtgatgcat atttttcagt tcccttagat 
     661 aaagacttca ggaaatatac tgcatttacc atacctagta taaacaatga gacaccaggg 
     721 gttagatatc agtacaatgt gctgccacag ggatggaaag gatcaccagc aatattccaa 
     781 agtagcatga caaaaatctt agagcctttt agaaaacaaa atccagacat agttatctat 
     841 caatacatgg atgatttgta tgtaggatct gacttagaaa tagggcagca tagaacaaaa 
     901 atagaggaac taagacaaca tctcttgaag tggggatttt acacaccaga caaaaaacat 
     961 cagaaagaac ctccattcct ttgga
//
last modified: Tue May 31 10:56 2022


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