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LOCUS	    AY075800		     997 bp    DNA     linear	VRL 10-JUN-2003
DEFINITION  HIV-1 isolate 97USB197n05pc1 from USA pol polyprotein (pol) gene,
	    partial cds
ACCESSION   AY075800
VERSION     AY075800.1 GI:18535870
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 997)
            Show all sequences for reference 1
  AUTHORS   Frenkel,L.M., Wang,Y., Learn,G.H., McKernan,J.L., Ellis,G.M.,
	    Mohan,K.M., Holte,S.E., Holte,S., De Vange,S.M., Pawluk,D.M.,
	    Melvin,A.J., Lewis,P.F., Lewis,P.E., Heath,L.M., Beck,I.A.,
	    Mahalanabis,M., Naugler,W.E., Tobin,N.H. and Mullins,J.I.
  TITLE     Multiple Viral Genetic Analyses Detect Low-Level Human
	    Immunodeficiency Virus Type 1 Replication during Effective Highly
	    Active Antiretroviral Therapy
  JOURNAL   J. Virol. 77 (10), 5721-5730 (2003)
  PUBMED    12719565
REFERENCE   2 (bases 1 to 997)
            Show all sequences for reference 2
  AUTHORS   Frenkel,L.M., Wang,Y., Learn,G.H., Melvin,A.J., Ellis,G.M.,
	    McKernan,J.L., De Vange,S.M., Holte,S., Sylva,G.L., Naugler,W.E.,
	    Mahalanabis,M., Beck,I., Mohan,K.M., Lewis,P.A., Heath,L.M.,
	    Tobin,N.H. and Mullins,J.I.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-JAN-2002) University of Washington, Center for AIDS
	    Research DNA Sequencing Facility, Rosen Bldg, Room 358, Box 358070,
	    Seattle, WA 98195-8070, USA
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Tobin,N.H., Learn,G.H., Holte,S.E., Wang,Y., Melvin,A.J.,
	    McKernan,J.L., Pawluk,D.M., Mohan,K.M., Lewis,P.F., Mullins,J.I.
	    and Frenkel,L.M.
  TITLE     Evidence that low-level viremias during effective highly active
	    antiretroviral therapy result from two processes: expression of
	    archival virus and replication of virus.
  JOURNAL   J. Virol. 79 (15), 9625-34 (2005)
  PUBMED    16014925
REFERENCE   4
            Show all sequences for reference 4
  AUTHORS   Wagner,T.A., McLaughlin,S., Garg,K., Cheung,C.Y.K., Larsen,B.B.,
	    Styrchak,S., Huang,H.C., Edlefsen,P.T., Mullins,J.I. and
	    Frenkel,L.M.
  TITLE     HIV latency. Proliferation of cells with HIV integrated into cancer
	    genes contributes to persistent infection.
  JOURNAL   Science.. 345(6196); 570-3 (2014)
  PUBMED    25011556
FEATURES             Location/Qualifiers
     source	     1..997
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="97USB197n05pc1"
		     /db_xref="taxon:11676"
		     /country="USA: Seattle"
		     /note="subject ID b1, sample date 05-NOV-1997"
     gene	     <1..>997
		     /gene="pol"
     CDS	     <1..>997
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol polyprotein"
		     /protein_id="AAL70221.1"
		     /db_xref="GI:18535871"
		     /translation="FSFPQITLWQRPLVPIRIGGQLKEALLDTGADDTVLEDMDLPGR
		     WKPKMIGGIGGFIKVKQYEQIPIEICGHKAIGTVLVGPTPVNIIGRNLLTQLGCTLNF
		     PISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTELEKEGKISKVGPENPYNT
		     PVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYF
		     SVPLDKEFRKYTAFTIPSINNKTPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQ
		     NPDIDIYQYVDDLYVGSDLEIGQHRAKVEELRQHLLAWGFTTPDKKHQKEPPFLWM"
BASE COUNT	384 a	 168 c	  208 g    237 t
ORIGIN
       1 tttagcttcc ctcagatcac tctttggcaa cgacccctcg tcccaataag gataggggga 
      61 cagctaaagg aggctctatt agatacagga gcagatgata cagtattaga agacatggat 
     121 ttgccaggaa gatggaaacc aaaaatgata gggggaattg gaggttttat caaagtaaaa 
     181 cagtatgagc agatacccat agaaatctgt ggacataaag ctataggtac agtattggta 
     241 ggacctacac ctgtcaacat aattggaaga aatctgttaa ctcagcttgg ttgcacttta 
     301 aattttccca tcagtcctat tgaaactgta ccagtaaaat taaagccagg aatggatggc 
     361 ccaaaagtta aacaatggcc attgacagaa gaaaaaataa aagcactagt agaaatttgt 
     421 acagaactgg aaaaggaagg aaaaatttca aaagttgggc ctgaaaatcc atacaatact 
     481 ccagtatttg ccataaagaa aaaagacagt actaaatgga gaaaattagt agatttcaga 
     541 gaacttaata agagaactca agacttctgg gaagttcaat tagggatacc acatcccgca 
     601 gggttaaaaa agaaaaaatc agtaacagta ctggatgtgg gtgatgcata tttttcagtt 
     661 cccttagata aagaattcag gaagtatact gcctttacca tacctagtat aaataataag 
     721 acaccaggaa ttagatatca gtacaatgtg cttccacagg gatggaaagg atcaccagca 
     781 atattccaaa gtagcatgac aaaaatctta gagccattta gaaaacaaaa tccagacata 
     841 gatatctatc aatacgtgga tgatttgtat gtaggatctg acttagaaat agggcagcat 
     901 agagcaaaag tagaggaact gagacaacat ctgttagcgt ggggatttac cacaccagat 
     961 aaaaaacatc agaaagaacc tccattcctt tggatgg
//
last modified: Tue May 31 10:56 2022


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