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LOCUS AY075800 997 bp DNA linear VRL 10-JUN-2003
DEFINITION HIV-1 isolate 97USB197n05pc1 from USA pol polyprotein (pol) gene,
partial cds
ACCESSION AY075800
VERSION AY075800.1 GI:18535870
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 997)
Show all sequences for reference 1
AUTHORS Frenkel,L.M., Wang,Y., Learn,G.H., McKernan,J.L., Ellis,G.M.,
Mohan,K.M., Holte,S.E., Holte,S., De Vange,S.M., Pawluk,D.M.,
Melvin,A.J., Lewis,P.F., Lewis,P.E., Heath,L.M., Beck,I.A.,
Mahalanabis,M., Naugler,W.E., Tobin,N.H. and Mullins,J.I.
TITLE Multiple Viral Genetic Analyses Detect Low-Level Human
Immunodeficiency Virus Type 1 Replication during Effective Highly
Active Antiretroviral Therapy
JOURNAL J. Virol. 77 (10), 5721-5730 (2003)
PUBMED 12719565
REFERENCE 2 (bases 1 to 997)
Show all sequences for reference 2
AUTHORS Frenkel,L.M., Wang,Y., Learn,G.H., Melvin,A.J., Ellis,G.M.,
McKernan,J.L., De Vange,S.M., Holte,S., Sylva,G.L., Naugler,W.E.,
Mahalanabis,M., Beck,I., Mohan,K.M., Lewis,P.A., Heath,L.M.,
Tobin,N.H. and Mullins,J.I.
TITLE Direct Submission
JOURNAL Submitted (25-JAN-2002) University of Washington, Center for AIDS
Research DNA Sequencing Facility, Rosen Bldg, Room 358, Box 358070,
Seattle, WA 98195-8070, USA
REFERENCE 3
Show all sequences for reference 3
AUTHORS Tobin,N.H., Learn,G.H., Holte,S.E., Wang,Y., Melvin,A.J.,
McKernan,J.L., Pawluk,D.M., Mohan,K.M., Lewis,P.F., Mullins,J.I.
and Frenkel,L.M.
TITLE Evidence that low-level viremias during effective highly active
antiretroviral therapy result from two processes: expression of
archival virus and replication of virus.
JOURNAL J. Virol. 79 (15), 9625-34 (2005)
PUBMED 16014925
REFERENCE 4
Show all sequences for reference 4
AUTHORS Wagner,T.A., McLaughlin,S., Garg,K., Cheung,C.Y.K., Larsen,B.B.,
Styrchak,S., Huang,H.C., Edlefsen,P.T., Mullins,J.I. and
Frenkel,L.M.
TITLE HIV latency. Proliferation of cells with HIV integrated into cancer
genes contributes to persistent infection.
JOURNAL Science.. 345(6196); 570-3 (2014)
PUBMED 25011556
FEATURES Location/Qualifiers
source 1..997
/organism="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="97USB197n05pc1"
/db_xref="taxon:11676"
/country="USA: Seattle"
/note="subject ID b1, sample date 05-NOV-1997"
gene <1..>997
/gene="pol"
CDS <1..>997
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol polyprotein"
/protein_id="AAL70221.1"
/db_xref="GI:18535871"
/translation="FSFPQITLWQRPLVPIRIGGQLKEALLDTGADDTVLEDMDLPGR
WKPKMIGGIGGFIKVKQYEQIPIEICGHKAIGTVLVGPTPVNIIGRNLLTQLGCTLNF
PISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTELEKEGKISKVGPENPYNT
PVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYF
SVPLDKEFRKYTAFTIPSINNKTPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQ
NPDIDIYQYVDDLYVGSDLEIGQHRAKVEELRQHLLAWGFTTPDKKHQKEPPFLWM"
BASE COUNT 384 a 168 c 208 g 237 t
ORIGIN
1 tttagcttcc ctcagatcac tctttggcaa cgacccctcg tcccaataag gataggggga
61 cagctaaagg aggctctatt agatacagga gcagatgata cagtattaga agacatggat
121 ttgccaggaa gatggaaacc aaaaatgata gggggaattg gaggttttat caaagtaaaa
181 cagtatgagc agatacccat agaaatctgt ggacataaag ctataggtac agtattggta
241 ggacctacac ctgtcaacat aattggaaga aatctgttaa ctcagcttgg ttgcacttta
301 aattttccca tcagtcctat tgaaactgta ccagtaaaat taaagccagg aatggatggc
361 ccaaaagtta aacaatggcc attgacagaa gaaaaaataa aagcactagt agaaatttgt
421 acagaactgg aaaaggaagg aaaaatttca aaagttgggc ctgaaaatcc atacaatact
481 ccagtatttg ccataaagaa aaaagacagt actaaatgga gaaaattagt agatttcaga
541 gaacttaata agagaactca agacttctgg gaagttcaat tagggatacc acatcccgca
601 gggttaaaaa agaaaaaatc agtaacagta ctggatgtgg gtgatgcata tttttcagtt
661 cccttagata aagaattcag gaagtatact gcctttacca tacctagtat aaataataag
721 acaccaggaa ttagatatca gtacaatgtg cttccacagg gatggaaagg atcaccagca
781 atattccaaa gtagcatgac aaaaatctta gagccattta gaaaacaaaa tccagacata
841 gatatctatc aatacgtgga tgatttgtat gtaggatctg acttagaaat agggcagcat
901 agagcaaaag tagaggaact gagacaacat ctgttagcgt ggggatttac cacaccagat
961 aaaaaacatc agaaagaacc tccattcctt tggatgg
//
last modified: Tue May 31 10:56 2022