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LOCUS AY075788 623 bp DNA linear VRL 29-APR-2003
DEFINITION HIV-1 isolate 00USB900719ecaps from USA nonfunctional envelope
glycoprotein (env) gene, partial sequence
ACCESSION AY075788
VERSION AY075788.1 GI:18535847
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 623)
Show all sequences for reference 1
AUTHORS Frenkel,L.M., Wang,Y., Learn,G.H., McKernan,J.L., Ellis,G.M.,
Mohan,K.M., Holte,S.E., Holte,S., De Vange,S.M., Pawluk,D.M.,
Melvin,A.J., Lewis,P.F., Lewis,P.E., Heath,L.M., Beck,I.A.,
Mahalanabis,M., Naugler,W.E., Tobin,N.H. and Mullins,J.I.
TITLE Multiple Viral Genetic Analyses Detect Low-Level Human
Immunodeficiency Virus Type 1 Replication during Effective Highly
Active Antiretroviral Therapy
JOURNAL J. Virol. 77 (10), 5721-5730 (2003)
PUBMED 12719565
REFERENCE 2 (bases 1 to 623)
Show all sequences for reference 2
AUTHORS Frenkel,L.M., Wang,Y., Learn,G.H., Melvin,A.J., Ellis,G.M.,
McKernan,J.L., De Vange,S.M., Holte,S., Sylva,G.L., Naugler,W.E.,
Mahalanabis,M., Beck,I., Mohan,K.M., Lewis,P.A., Heath,L.M.,
Tobin,N.H. and Mullins,J.I.
TITLE Direct Submission
JOURNAL Submitted (25-JAN-2002) University of Washington, Center for AIDS
Research DNA Sequencing Facility, Rosen Bldg, Room 358, Box 358070,
Seattle, WA 98195-8070, USA
REFERENCE 3
Show all sequences for reference 3
AUTHORS Tobin,N.H., Learn,G.H., Holte,S.E., Wang,Y., Melvin,A.J.,
McKernan,J.L., Pawluk,D.M., Mohan,K.M., Lewis,P.F., Mullins,J.I.
and Frenkel,L.M.
TITLE Evidence that low-level viremias during effective highly active
antiretroviral therapy result from two processes: expression of
archival virus and replication of virus.
JOURNAL J. Virol. 79 (15), 9625-34 (2005)
PUBMED 16014925
REFERENCE 4
Show all sequences for reference 4
AUTHORS Wagner,T.A., McLaughlin,S., Garg,K., Cheung,C.Y.K., Larsen,B.B.,
Styrchak,S., Huang,H.C., Edlefsen,P.T., Mullins,J.I. and
Frenkel,L.M.
TITLE HIV latency. Proliferation of cells with HIV integrated into cancer
genes contributes to persistent infection.
JOURNAL Science.. 345(6196); 570-3 (2014)
PUBMED 25011556
FEATURES Location/Qualifiers
source 1..623
/organism="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="00USB900719ecaps"
/db_xref="taxon:11676"
/country="USA: Seattle"
/note="subject ID b9 (mother of b1), sample date
19-JUL-2000"
gene <1..>623
/gene="env"
misc_feature <1..>623
/gene="env"
/note="nonfunctional envelope glycoprotein due to
mutation"
BASE COUNT 254 a 91 c 125 g 153 t
ORIGIN
1 agaggaagag gtagtaatta ggtctgaaaa tttctcgaac aatgctaaaa ccataatagt
61 acagctgaaa gaagctgtag aaatcaattg tacaagaccc aacaacaata caagaaaaag
121 tatacatata ggaccaggga gaacatttta cacaacagga gatataatag gagatataag
181 acaagcacat tgtaacatta gtagagcaaa atggaatacc actttaaaac agatagttac
241 aaaattaagg gaacaattta ataaaacaat agtctttaat caagcttcag gaggggaccc
301 agaaattgta atgcacaatt ttaattgtgg aggggaattt ttctactgta attcatcaca
361 actgtttaat agtacttaga agattaatga tacttggaat gttaatgata ctgaagggtc
421 aaataacact gaccatatca tactcccatg tagactaaga caaattataa acatgtggca
481 ggaagtagga aaagcaatgt atgcccctcc catcagtgga caaattagat gttcatcaaa
541 tattacaggg ttgttgttaa caagagatgg tggtaatagt aatgagagca acaacgagac
601 cttcagacct ggaggaggag ata
//
last modified: Tue May 31 10:56 2022