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LOCUS	    AY075788		     623 bp    DNA     linear	VRL 29-APR-2003
DEFINITION  HIV-1 isolate 00USB900719ecaps from USA nonfunctional envelope
	    glycoprotein (env) gene, partial sequence
ACCESSION   AY075788
VERSION     AY075788.1 GI:18535847
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 623)
            Show all sequences for reference 1
  AUTHORS   Frenkel,L.M., Wang,Y., Learn,G.H., McKernan,J.L., Ellis,G.M.,
	    Mohan,K.M., Holte,S.E., Holte,S., De Vange,S.M., Pawluk,D.M.,
	    Melvin,A.J., Lewis,P.F., Lewis,P.E., Heath,L.M., Beck,I.A.,
	    Mahalanabis,M., Naugler,W.E., Tobin,N.H. and Mullins,J.I.
  TITLE     Multiple Viral Genetic Analyses Detect Low-Level Human
	    Immunodeficiency Virus Type 1 Replication during Effective Highly
	    Active Antiretroviral Therapy
  JOURNAL   J. Virol. 77 (10), 5721-5730 (2003)
  PUBMED    12719565
REFERENCE   2 (bases 1 to 623)
            Show all sequences for reference 2
  AUTHORS   Frenkel,L.M., Wang,Y., Learn,G.H., Melvin,A.J., Ellis,G.M.,
	    McKernan,J.L., De Vange,S.M., Holte,S., Sylva,G.L., Naugler,W.E.,
	    Mahalanabis,M., Beck,I., Mohan,K.M., Lewis,P.A., Heath,L.M.,
	    Tobin,N.H. and Mullins,J.I.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-JAN-2002) University of Washington, Center for AIDS
	    Research DNA Sequencing Facility, Rosen Bldg, Room 358, Box 358070,
	    Seattle, WA 98195-8070, USA
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Tobin,N.H., Learn,G.H., Holte,S.E., Wang,Y., Melvin,A.J.,
	    McKernan,J.L., Pawluk,D.M., Mohan,K.M., Lewis,P.F., Mullins,J.I.
	    and Frenkel,L.M.
  TITLE     Evidence that low-level viremias during effective highly active
	    antiretroviral therapy result from two processes: expression of
	    archival virus and replication of virus.
  JOURNAL   J. Virol. 79 (15), 9625-34 (2005)
  PUBMED    16014925
REFERENCE   4
            Show all sequences for reference 4
  AUTHORS   Wagner,T.A., McLaughlin,S., Garg,K., Cheung,C.Y.K., Larsen,B.B.,
	    Styrchak,S., Huang,H.C., Edlefsen,P.T., Mullins,J.I. and
	    Frenkel,L.M.
  TITLE     HIV latency. Proliferation of cells with HIV integrated into cancer
	    genes contributes to persistent infection.
  JOURNAL   Science.. 345(6196); 570-3 (2014)
  PUBMED    25011556
FEATURES             Location/Qualifiers
     source	     1..623
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="00USB900719ecaps"
		     /db_xref="taxon:11676"
		     /country="USA: Seattle"
		     /note="subject ID b9 (mother of b1), sample date
		     19-JUL-2000"
     gene	     <1..>623
		     /gene="env"
     misc_feature    <1..>623
		     /gene="env"
		     /note="nonfunctional envelope glycoprotein due to
		     mutation"
BASE COUNT	254 a	  91 c	  125 g    153 t
ORIGIN
       1 agaggaagag gtagtaatta ggtctgaaaa tttctcgaac aatgctaaaa ccataatagt 
      61 acagctgaaa gaagctgtag aaatcaattg tacaagaccc aacaacaata caagaaaaag 
     121 tatacatata ggaccaggga gaacatttta cacaacagga gatataatag gagatataag 
     181 acaagcacat tgtaacatta gtagagcaaa atggaatacc actttaaaac agatagttac 
     241 aaaattaagg gaacaattta ataaaacaat agtctttaat caagcttcag gaggggaccc 
     301 agaaattgta atgcacaatt ttaattgtgg aggggaattt ttctactgta attcatcaca 
     361 actgtttaat agtacttaga agattaatga tacttggaat gttaatgata ctgaagggtc 
     421 aaataacact gaccatatca tactcccatg tagactaaga caaattataa acatgtggca 
     481 ggaagtagga aaagcaatgt atgcccctcc catcagtgga caaattagat gttcatcaaa 
     541 tattacaggg ttgttgttaa caagagatgg tggtaatagt aatgagagca acaacgagac 
     601 cttcagacct ggaggaggag ata
//
last modified: Tue May 31 10:56 2022


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