View NCBI entry Download GenBank file Graphics View Download GFF3 File
LOCUS AY030804 1203 bp RNA linear VRL 16-AUG-2001
DEFINITION HIV-1 isolate NC2097-1998 from USA pol polyprotein (pol) gene,
partial cds
ACCESSION AY030804
VERSION AY030804.1 GI:13736645
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1203)
Show all sequences for reference 1
AUTHORS Shafer,R., Gonzales,M.J. and Brun-Vezinet,F.
TITLE Online comparison of HIV-1 drug resistance algorithms identifies
rates and causes of discordant interpretations
JOURNAL Antiviral Therapy 6 (Suppl. 1), 101 (2001)
REFERENCE 2 (bases 1 to 1203)
Show all sequences for reference 2
AUTHORS Gonzales,M.J., Machekano,R.N. and Shafer,R.W.
TITLE Direct Submission
JOURNAL Submitted (10-APR-2001) Medicine, Division of Infectious Diseases &
Geographic Medicine, Stanford University Medical Center, 300
Pasteur Drive, S-156, Stanford, CA 94305, USA
REFERENCE 3
Show all sequences for reference 3
AUTHORS Gonzales,M.J., Machekano,R.N. and Shafer,R.W.
TITLE Human immunodeficiency virus type 1 reverse-transcriptase and
protease subtypes: classification, amino acid mutation patterns,
and prevalence in a northern California clinic-based population
JOURNAL J. Infect. Dis. 184 (8), 998-1006 (2001)
PUBMED 11574914
REFERENCE 4
Show all sequences for reference 4
AUTHORS Rhee,S.-Y., Fessel,W.J., Liu,T.F., Marlowe,N.M., Rowland,C.M.,
Rode,R.A., Vandamme,A.-M., Van Laethem,K., Brun-Vezinet,F.,
Calvez,V., Taylor,J., Hurley,L., Horberg,M. and Shafer,R.W.
TITLE Predictive value of HIV-1 genotypic resistance test interpretation
algorithms.
JOURNAL J. Infect. Dis.. 200(3); 453-63 (2009)
PUBMED 19552527
FEATURES Location/Qualifiers
source 1..1203
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="NC2097-1998"
/db_xref="taxon:11676"
/country="USA: Northern California"
gene <1..>1203
/gene="pol"
CDS <1..>1203
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol polyprotein"
/protein_id="AAK35619.1"
/db_xref="GI:13736646"
/translation="PQITLWQRPIVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKP
KLIGGIGGFIKVRQYDQVPIEICGHKAIGSVLVGPTPTNIIGRNLMTQLGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTELEKEGKISKIGPENPYNTPVF
AIKKKBSTRWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQASMTKILEPFRKRNPD
IVIYQYVDDLYVGSDLEIGQHRTKIEELREHLLRWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGTKALXEVV
PLTEEAELE"
BASE COUNT 462 a 202 c 257 g 278 t 4 other
ORIGIN
1 cctcagatca ctctttggca acgacccatc gtcacaataa agataggggg gcagctaaag
61 gaagctctat tggatacagg agcagatgat acagtattag aagaaatgaa tttgccagga
121 agatggaaac caaaattrat agggggaatt ggaggtttta tcaaagtaag acagtatgat
181 caggtaccca tagagatctg tggacataaa gctataggtt cagtattagt aggacctaca
241 cctaccaaca taattggaag aaatctgatg actcagcttg gttgcacttt aaattttccc
301 attagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaagtt
361 aaacaatggc cattgacaga agaaaaaata aaagcattag tagaaatttg tacagaactg
421 gaaaaggaag gaaaaatttc aaaaataggg cctgaaaatc catacaatac tccagtcttt
481 gccataaaga aaaagracag tactaggtgg agaaaattag tagatttcag ggaacttaat
541 aagagaactc aagacttctg ggaagttcag ttaggaatac cacatcctgc agggttaaaa
601 aagaaaaaat cagtaacagt actggatgtg ggtgatgcat atttttcagt tcccttagac
661 aaagacttca ggaagtatac tgcatttacc atacctagta taaacaatga gacaccaggg
721 attagatatc agtacaatgt gcttccacar ggatggaaag gatcaccagc aatattccaa
781 gctagcatga caaaaatctt agagcctttt agaaaacgaa atccagacat agttatctat
841 caatacgtgg atgatttgta tgtaggatct gacttagaaa tagggcagca tagaacaaaa
901 atagaggaac tgagagaaca tctgttaagg tggggattta ccacaccaga caaaaaacat
961 cagaaagaac ctccattcct ttggatgggc tatgaacttc atcctgataa atggacagta
1021 cagcctatag tgctgccaga aaaagacagc tggactgtca atgacataca gaagttagtg
1081 ggaaaattga attgggcaag tcagatttac ccagggatta aagtaaaaca attatgtaaa
1141 ctccttaggg gaaccaaagc actarcagaa gtagtaccac taacagaaga agcagagcta
1201 gaa
//
last modified: Tue May 31 10:56 2022