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LOCUS	    AY030804		    1203 bp    RNA     linear	VRL 16-AUG-2001
DEFINITION  HIV-1 isolate NC2097-1998 from USA pol polyprotein (pol) gene,
	    partial cds
ACCESSION   AY030804
VERSION     AY030804.1 GI:13736645
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1203)
            Show all sequences for reference 1
  AUTHORS   Shafer,R., Gonzales,M.J. and Brun-Vezinet,F.
  TITLE     Online comparison of HIV-1 drug resistance algorithms identifies
	    rates and causes of discordant interpretations
  JOURNAL   Antiviral Therapy 6 (Suppl. 1), 101 (2001)
REFERENCE   2 (bases 1 to 1203)
            Show all sequences for reference 2
  AUTHORS   Gonzales,M.J., Machekano,R.N. and Shafer,R.W.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-APR-2001) Medicine, Division of Infectious Diseases &
	    Geographic Medicine, Stanford University Medical Center, 300
	    Pasteur Drive, S-156, Stanford, CA 94305, USA
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Gonzales,M.J., Machekano,R.N. and Shafer,R.W.
  TITLE     Human immunodeficiency virus type 1 reverse-transcriptase and
	    protease subtypes: classification, amino acid mutation patterns,
	    and prevalence in a northern California clinic-based population
  JOURNAL   J. Infect. Dis. 184 (8), 998-1006 (2001)
  PUBMED    11574914
REFERENCE   4
            Show all sequences for reference 4
  AUTHORS   Rhee,S.-Y., Fessel,W.J., Liu,T.F., Marlowe,N.M., Rowland,C.M.,
	    Rode,R.A., Vandamme,A.-M., Van Laethem,K., Brun-Vezinet,F.,
	    Calvez,V., Taylor,J., Hurley,L., Horberg,M. and Shafer,R.W.
  TITLE     Predictive value of HIV-1 genotypic resistance test interpretation
	    algorithms.
  JOURNAL   J. Infect. Dis.. 200(3); 453-63 (2009)
  PUBMED    19552527
FEATURES             Location/Qualifiers
     source	     1..1203
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="NC2097-1998"
		     /db_xref="taxon:11676"
		     /country="USA: Northern California"
     gene	     <1..>1203
		     /gene="pol"
     CDS	     <1..>1203
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol polyprotein"
		     /protein_id="AAK35619.1"
		     /db_xref="GI:13736646"
		     /translation="PQITLWQRPIVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKP
		     KLIGGIGGFIKVRQYDQVPIEICGHKAIGSVLVGPTPTNIIGRNLMTQLGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTELEKEGKISKIGPENPYNTPVF
		     AIKKKBSTRWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQASMTKILEPFRKRNPD
		     IVIYQYVDDLYVGSDLEIGQHRTKIEELREHLLRWGFTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGTKALXEVV
		     PLTEEAELE"
BASE COUNT	462 a	 202 c	  257 g    278 t      4 other
ORIGIN
       1 cctcagatca ctctttggca acgacccatc gtcacaataa agataggggg gcagctaaag 
      61 gaagctctat tggatacagg agcagatgat acagtattag aagaaatgaa tttgccagga 
     121 agatggaaac caaaattrat agggggaatt ggaggtttta tcaaagtaag acagtatgat 
     181 caggtaccca tagagatctg tggacataaa gctataggtt cagtattagt aggacctaca 
     241 cctaccaaca taattggaag aaatctgatg actcagcttg gttgcacttt aaattttccc 
     301 attagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaagtt 
     361 aaacaatggc cattgacaga agaaaaaata aaagcattag tagaaatttg tacagaactg 
     421 gaaaaggaag gaaaaatttc aaaaataggg cctgaaaatc catacaatac tccagtcttt 
     481 gccataaaga aaaagracag tactaggtgg agaaaattag tagatttcag ggaacttaat 
     541 aagagaactc aagacttctg ggaagttcag ttaggaatac cacatcctgc agggttaaaa 
     601 aagaaaaaat cagtaacagt actggatgtg ggtgatgcat atttttcagt tcccttagac 
     661 aaagacttca ggaagtatac tgcatttacc atacctagta taaacaatga gacaccaggg 
     721 attagatatc agtacaatgt gcttccacar ggatggaaag gatcaccagc aatattccaa 
     781 gctagcatga caaaaatctt agagcctttt agaaaacgaa atccagacat agttatctat 
     841 caatacgtgg atgatttgta tgtaggatct gacttagaaa tagggcagca tagaacaaaa 
     901 atagaggaac tgagagaaca tctgttaagg tggggattta ccacaccaga caaaaaacat 
     961 cagaaagaac ctccattcct ttggatgggc tatgaacttc atcctgataa atggacagta 
    1021 cagcctatag tgctgccaga aaaagacagc tggactgtca atgacataca gaagttagtg 
    1081 ggaaaattga attgggcaag tcagatttac ccagggatta aagtaaaaca attatgtaaa 
    1141 ctccttaggg gaaccaaagc actarcagaa gtagtaccac taacagaaga agcagagcta 
    1201 gaa
//
last modified: Tue May 31 10:56 2022


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