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LOCUS	    AY030739		    1203 bp    RNA     linear	VRL 16-AUG-2001
DEFINITION  HIV-1 isolate NC1826-1998 from USA pol polyprotein (pol) gene,
	    partial cds
ACCESSION   AY030739
VERSION     AY030739.1 GI:13736515
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1203)
            Show all sequences for reference 1
  AUTHORS   Shafer,R., Gonzales,M.J. and Brun-Vezinet,F.
  TITLE     Online comparison of HIV-1 drug resistance algorithms identifies
	    rates and causes of discordant interpretations
  JOURNAL   Antiviral Therapy 6 (Suppl. 1), 101 (2001)
REFERENCE   2 (bases 1 to 1203)
            Show all sequences for reference 2
  AUTHORS   Gonzales,M.J., Machekano,R.N. and Shafer,R.W.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-APR-2001) Medicine, Division of Infectious Diseases &
	    Geographic Medicine, Stanford University Medical Center, 300
	    Pasteur Drive, S-156, Stanford, CA 94305, USA
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Gonzales,M.J., Machekano,R.N. and Shafer,R.W.
  TITLE     Human immunodeficiency virus type 1 reverse-transcriptase and
	    protease subtypes: classification, amino acid mutation patterns,
	    and prevalence in a northern California clinic-based population
  JOURNAL   J. Infect. Dis. 184 (8), 998-1006 (2001)
  PUBMED    11574914
REFERENCE   4
            Show all sequences for reference 4
  AUTHORS   Rhee,S.-Y., Fessel,W.J., Liu,T.F., Marlowe,N.M., Rowland,C.M.,
	    Rode,R.A., Vandamme,A.-M., Van Laethem,K., Brun-Vezinet,F.,
	    Calvez,V., Taylor,J., Hurley,L., Horberg,M. and Shafer,R.W.
  TITLE     Predictive value of HIV-1 genotypic resistance test interpretation
	    algorithms.
  JOURNAL   J. Infect. Dis.. 200(3); 453-63 (2009)
  PUBMED    19552527
FEATURES             Location/Qualifiers
     source	     1..1203
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="NC1826-1998"
		     /db_xref="taxon:11676"
		     /country="USA: Northern California"
     gene	     <1..>1203
		     /gene="pol"
     CDS	     <1..>1203
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol polyprotein"
		     /protein_id="AAK35554.1"
		     /db_xref="GI:13736516"
		     /translation="PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMCLPGRWKP
		     KLIVGIGGFIKVRQYDQIAIEICGHKAIGXVLIGPTPVNIIGRNLXTQIGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTELEQEGKISKIGPENPYNTPIF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIP
		     LDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPD
		     IVIYQYVDDLYVGSDLEIGQHRTKIKELREHLWKWGFYTPDRKHQKXPPFHWMGYELH
		     PDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGTXALTEVV
		     PLTEEAELE"
BASE COUNT	465 a	 198 c	  256 g    278 t      6 other
ORIGIN
       1 cctcagatca ctctttggca acgacccctc gtcacaataa agataggggg gcaactaaag 
      61 gaagctctat tagatacagg agcagatgat acagtattag aagaaatgtg tttgccagga 
     121 agatggaaac caaaattgat agtgggaatt ggaggtttta tcaaagtaag acagtatgat 
     181 cagatagcca tagaaatctg tggacataag gctataggtr cagtattaat aggacctaca 
     241 cctgtcaaca taattggaag aaatctgwtg actcagattg gttgcactct aaattttccc 
     301 attagtccta ttgaaactgt accagtgaaa ttaaagccag gaatggatgg cccaaaagtt 
     361 aaacaatggc cattgacaga agaaaaaata aaagcattag tagaaatttg tacagaactg 
     421 gaacaggaag gaaaaatttc aaaaattggg cctgaaaatc catacaatac tccaatattt 
     481 gccataaaga aaaaagacag tactaaatgg agaaaattag tagatttcag agagcttaat 
     541 aagagaactc aagacttctg ggaagttcaa ttaggaatac cacatcccgc agggttaaaa 
     601 aagaaaaaat cagtaacagt actggatgtg ggtgatgcat atttctcaat tcccttagat 
     661 aaagacttca ggaagtatac tgcatttacc atacctagta taaacaatga gacaccaggg 
     721 attagatatc agtacaatgt gcttccacaa ggatggaaag gatcaccagc aatattccaa 
     781 agtagcatga caaaaatctt agagcctttt agaaaacaga atccagacat agttatctat 
     841 caatacgtgg atgayttgta tgtaggatct gacttagaaa tagggcagca tagaacaaaa 
     901 ataaaggaac tgagagaaca tctgtggaag tggggatttt acacaccaga cagaaaacat 
     961 cagaaagamc ctccattyca ttggatgggt tatgaactcc atcctgataa atggacagta 
    1021 cagcctatag tgctgccaga aaaagacagc tggactgtca atgacataca gaagttagtg 
    1081 ggaaaattga attgggcaag tcagatttac ccagggatta aagtgaagca attgtgtaaa 
    1141 ctccttaggg gaaccamagc attaacagaa gtagtaccac taacagaaga agcagagcta 
    1201 gaa
//
last modified: Tue May 31 10:56 2022


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