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LOCUS AY030445 1071 bp RNA linear VRL 16-AUG-2001
DEFINITION HIV-1 isolate NC1130-1997 from USA pol polyprotein (pol) gene,
partial cds
ACCESSION AY030445
VERSION AY030445.1 GI:13735927
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1071)
Show all sequences for reference 1
AUTHORS Shafer,R., Gonzales,M.J. and Brun-Vezinet,F.
TITLE Online comparison of HIV-1 drug resistance algorithms identifies
rates and causes of discordant interpretations
JOURNAL Antiviral Therapy 6 (Suppl. 1), 101 (2001)
REFERENCE 2 (bases 1 to 1071)
Show all sequences for reference 2
AUTHORS Gonzales,M.J., Machekano,R.N. and Shafer,R.W.
TITLE Direct Submission
JOURNAL Submitted (10-APR-2001) Medicine, Division of Infectious Diseases &
Geographic Medicine, Stanford University Medical Center, 300
Pasteur Drive, S-156, Stanford, CA 94305, USA
REFERENCE 3
Show all sequences for reference 3
AUTHORS Gonzales,M.J., Machekano,R.N. and Shafer,R.W.
TITLE Human immunodeficiency virus type 1 reverse-transcriptase and
protease subtypes: classification, amino acid mutation patterns,
and prevalence in a northern California clinic-based population
JOURNAL J. Infect. Dis. 184 (8), 998-1006 (2001)
PUBMED 11574914
FEATURES Location/Qualifiers
source 1..1071
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="NC1130-1997"
/db_xref="taxon:11676"
/country="USA: Northern California"
gene <1..>1071
/gene="pol"
CDS <1..>1071
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol polyprotein"
/protein_id="AAK35260.1"
/db_xref="GI:13735928"
/translation="PQITLWQRPIVSIKIGGQLKEALLDTGADDTVXEEMNLPGRWKP
KMIXGIGGFXKVRQYDQIPIEICGHKVISTVLIGPTPVNIIGRNLMTQLGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEXEGKISKIGPENPYNTPVF
AIKKKNSTRWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDEEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKKNPE
MVIYQYVDDLYVGSDLEIGQHRTKIEELREHLLKWGLTTPDQKHQKEPPFLWMGYELH
PDKWTVQPIVLPEKDSWTVNDIQ"
BASE COUNT 414 a 176 c 220 g 252 t 9 other
ORIGIN
1 cctcagatca ctctttggca acgacccatc gtctcaataa agataggggg gcaactaaag
61 gaagctctat tagatacagg agcagatgat acagtattmg aagaaatgaa tttgccagga
121 agatggaaac caaaaatgat agkgggaatt ggaggttttm ttaaagtaag acagtatgat
181 cagataccca tagaaatctg tgggcataaa gttataagta cagtattaat aggacctaca
241 cctgtcaaca taattggaag aaatctratg actcagcttg gttgcacttt aaattttccc
301 attagtccta ttgaaactgt accagtaaaa ttaaarccag gaatggatgg cccaaaagtt
361 aaacaatggc cattracaga agaaaaaata aaagcattag tagaaatttg tacagaaatg
421 gaaraggaag gaaaaatttc aaaaattggg cctgaaaatc catacaatac tccagtgttt
481 gccataaaga aaaaaaacag cactagatgg agaaaattag tagatttcag agaacttaat
541 aagagaactc aagacttctg ggaagttcaa ttaggaatac cacatcctgc agggttaaaa
601 aagaaaaaat cagtaacagt actggatgtg ggtgatgcat atttctcagt tcccttagat
661 gaagaattca ggaagtacac tgcatttacc atacctagta taaacaatga gacaccaggg
721 attagatatc agtacaatgt gcttccacag ggatggaaag gatcaccagc aatattccaa
781 agtagtatga caaaaatctt agagcctttt agaaagaaaa atccagaaat ggttatctat
841 caatacgtgg atgatttgta tgtaggatct gacttagaaa tagggcagca tagaacaaaa
901 atagaggaac tgagagaaca cctattgaag tggggactta ccacaccaga ccaaaagcat
961 cagaaagaac ctccattcct ttggatgggt tatgaactcc atcctgataa atggacagta
1021 cagcctatag tgctgccaga aaargacagy tggactgtca atgacataca g
//
last modified: Tue May 31 10:56 2022