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LOCUS	    AY030445		    1071 bp    RNA     linear	VRL 16-AUG-2001
DEFINITION  HIV-1 isolate NC1130-1997 from USA pol polyprotein (pol) gene,
	    partial cds
ACCESSION   AY030445
VERSION     AY030445.1 GI:13735927
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1071)
            Show all sequences for reference 1
  AUTHORS   Shafer,R., Gonzales,M.J. and Brun-Vezinet,F.
  TITLE     Online comparison of HIV-1 drug resistance algorithms identifies
	    rates and causes of discordant interpretations
  JOURNAL   Antiviral Therapy 6 (Suppl. 1), 101 (2001)
REFERENCE   2 (bases 1 to 1071)
            Show all sequences for reference 2
  AUTHORS   Gonzales,M.J., Machekano,R.N. and Shafer,R.W.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-APR-2001) Medicine, Division of Infectious Diseases &
	    Geographic Medicine, Stanford University Medical Center, 300
	    Pasteur Drive, S-156, Stanford, CA 94305, USA
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Gonzales,M.J., Machekano,R.N. and Shafer,R.W.
  TITLE     Human immunodeficiency virus type 1 reverse-transcriptase and
	    protease subtypes: classification, amino acid mutation patterns,
	    and prevalence in a northern California clinic-based population
  JOURNAL   J. Infect. Dis. 184 (8), 998-1006 (2001)
  PUBMED    11574914
FEATURES             Location/Qualifiers
     source	     1..1071
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="NC1130-1997"
		     /db_xref="taxon:11676"
		     /country="USA: Northern California"
     gene	     <1..>1071
		     /gene="pol"
     CDS	     <1..>1071
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol polyprotein"
		     /protein_id="AAK35260.1"
		     /db_xref="GI:13735928"
		     /translation="PQITLWQRPIVSIKIGGQLKEALLDTGADDTVXEEMNLPGRWKP
		     KMIXGIGGFXKVRQYDQIPIEICGHKVISTVLIGPTPVNIIGRNLMTQLGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEXEGKISKIGPENPYNTPVF
		     AIKKKNSTRWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDEEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKKNPE
		     MVIYQYVDDLYVGSDLEIGQHRTKIEELREHLLKWGLTTPDQKHQKEPPFLWMGYELH
		     PDKWTVQPIVLPEKDSWTVNDIQ"
BASE COUNT	414 a	 176 c	  220 g    252 t      9 other
ORIGIN
       1 cctcagatca ctctttggca acgacccatc gtctcaataa agataggggg gcaactaaag 
      61 gaagctctat tagatacagg agcagatgat acagtattmg aagaaatgaa tttgccagga 
     121 agatggaaac caaaaatgat agkgggaatt ggaggttttm ttaaagtaag acagtatgat 
     181 cagataccca tagaaatctg tgggcataaa gttataagta cagtattaat aggacctaca 
     241 cctgtcaaca taattggaag aaatctratg actcagcttg gttgcacttt aaattttccc 
     301 attagtccta ttgaaactgt accagtaaaa ttaaarccag gaatggatgg cccaaaagtt 
     361 aaacaatggc cattracaga agaaaaaata aaagcattag tagaaatttg tacagaaatg 
     421 gaaraggaag gaaaaatttc aaaaattggg cctgaaaatc catacaatac tccagtgttt 
     481 gccataaaga aaaaaaacag cactagatgg agaaaattag tagatttcag agaacttaat 
     541 aagagaactc aagacttctg ggaagttcaa ttaggaatac cacatcctgc agggttaaaa 
     601 aagaaaaaat cagtaacagt actggatgtg ggtgatgcat atttctcagt tcccttagat 
     661 gaagaattca ggaagtacac tgcatttacc atacctagta taaacaatga gacaccaggg 
     721 attagatatc agtacaatgt gcttccacag ggatggaaag gatcaccagc aatattccaa 
     781 agtagtatga caaaaatctt agagcctttt agaaagaaaa atccagaaat ggttatctat 
     841 caatacgtgg atgatttgta tgtaggatct gacttagaaa tagggcagca tagaacaaaa 
     901 atagaggaac tgagagaaca cctattgaag tggggactta ccacaccaga ccaaaagcat 
     961 cagaaagaac ctccattcct ttggatgggt tatgaactcc atcctgataa atggacagta 
    1021 cagcctatag tgctgccaga aaargacagy tggactgtca atgacataca g
//
last modified: Tue May 31 10:56 2022


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