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LOCUS AY030443 1065 bp RNA linear VRL 16-AUG-2001
DEFINITION HIV-1 isolate NC1128-1997 from USA pol polyprotein (pol) gene,
partial cds
ACCESSION AY030443
VERSION AY030443.1 GI:13735923
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1065)
Show all sequences for reference 1
AUTHORS Shafer,R., Gonzales,M.J. and Brun-Vezinet,F.
TITLE Online comparison of HIV-1 drug resistance algorithms identifies
rates and causes of discordant interpretations
JOURNAL Antiviral Therapy 6 (Suppl. 1), 101 (2001)
REFERENCE 2 (bases 1 to 1065)
Show all sequences for reference 2
AUTHORS Gonzales,M.J., Machekano,R.N. and Shafer,R.W.
TITLE Direct Submission
JOURNAL Submitted (10-APR-2001) Medicine, Division of Infectious Diseases &
Geographic Medicine, Stanford University Medical Center, 300
Pasteur Drive, S-156, Stanford, CA 94305, USA
REFERENCE 3
Show all sequences for reference 3
AUTHORS Gonzales,M.J., Machekano,R.N. and Shafer,R.W.
TITLE Human immunodeficiency virus type 1 reverse-transcriptase and
protease subtypes: classification, amino acid mutation patterns,
and prevalence in a northern California clinic-based population
JOURNAL J. Infect. Dis. 184 (8), 998-1006 (2001)
PUBMED 11574914
FEATURES Location/Qualifiers
source 1..1065
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="NC1128-1997"
/db_xref="taxon:11676"
/country="USA: Northern California"
gene <1..>1065
/gene="pol"
CDS <1..>1065
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol polyprotein"
/protein_id="AAK35258.1"
/db_xref="GI:13735924"
/translation="PQITLWQRPIVTIKIGGQLKEALIDTGADDTVLEEMNLPGRWKP
KLIGGIGGFVKVRQYDQIPVEICGHKTIGTVLVGPTPANIIGRNLLTQIGCTLNFPIS
PIDTVPVKLKPGMDGPKVKQWPLTEEKIKALVEICAELEKDGKISKIGPENPYNTPVF
AIKKKNSTRWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPD
IVIYQYVDDLYVGSDLEIGQHRTKVEELRQHLWKWGFYTPDQKHQKEPPFLWMGYELH
PDKWTVQPIVLPEKDSWTVND"
BASE COUNT 401 a 180 c 229 g 250 t 5 other
ORIGIN
1 cctcaaatca ctctttggca acgacccatc gtcacaataa agataggggg gcagctaaag
61 gaagctctaa tagatacagg agcagatgat acagtattag aagaaatgaa tttgccagga
121 agatggaaac caaaattgat agggggaatt ggaggttttg tcaaagtaag acaatatgat
181 cagatacccg tagaaatctg tggacataaa actataggta cagtgttagt aggacctaca
241 cctgccaaca taatcggaag aaatctgttg actcagattg gttgcacttt aaattttccc
301 attagtccta ttgacactgt accagtaaaa ttaaagccag gaatggatgg cccaaaagtt
361 aaacagtggc cattgacaga agaaaaaata aaagcattag tagaaatttg tgcagaattg
421 gaaaaggayg graaaatttc aaaaattggg cctgaaaatc catacaatac tccagtattt
481 gccataaaga aaaagaacag tactagatgg agraaattag tagatttcag agaacttaat
541 aagagaactc aagacttctg ggaagttcaa ttagggatac cacatcccgc agggttaaaa
601 aagaaaaagt cagtaacagt actggatgtg ggtgatgcat atttttcagt tcccttagat
661 gaagacttca ggaagtatac tgcctttacc atacctagya taaacaatga gacaccaggg
721 attagatatc agtacaatgt gcttccacag ggatggaaag gatcaccagc aatatttcaa
781 agtagcatga caaaaatctt agagcctttt agaaaacaaa atccagacat agttatctat
841 caatacgtgg atgatttgta tgtaggatct gayttagaaa tagggcagca tagaacaaaa
901 gtagaggaac tgagacagca tctgtggaag tggggatttt acacaccaga ccaaaaacac
961 cagaaagaac ctccattcct ttggatgggt tatgaactcc atcctgataa atggacagta
1021 cagcctatag tgctgccaga aaaagacagc tggactgtca atgac
//
last modified: Tue May 31 10:56 2022