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LOCUS	    AY030443		    1065 bp    RNA     linear	VRL 16-AUG-2001
DEFINITION  HIV-1 isolate NC1128-1997 from USA pol polyprotein (pol) gene,
	    partial cds
ACCESSION   AY030443
VERSION     AY030443.1 GI:13735923
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1065)
            Show all sequences for reference 1
  AUTHORS   Shafer,R., Gonzales,M.J. and Brun-Vezinet,F.
  TITLE     Online comparison of HIV-1 drug resistance algorithms identifies
	    rates and causes of discordant interpretations
  JOURNAL   Antiviral Therapy 6 (Suppl. 1), 101 (2001)
REFERENCE   2 (bases 1 to 1065)
            Show all sequences for reference 2
  AUTHORS   Gonzales,M.J., Machekano,R.N. and Shafer,R.W.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-APR-2001) Medicine, Division of Infectious Diseases &
	    Geographic Medicine, Stanford University Medical Center, 300
	    Pasteur Drive, S-156, Stanford, CA 94305, USA
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Gonzales,M.J., Machekano,R.N. and Shafer,R.W.
  TITLE     Human immunodeficiency virus type 1 reverse-transcriptase and
	    protease subtypes: classification, amino acid mutation patterns,
	    and prevalence in a northern California clinic-based population
  JOURNAL   J. Infect. Dis. 184 (8), 998-1006 (2001)
  PUBMED    11574914
FEATURES             Location/Qualifiers
     source	     1..1065
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="NC1128-1997"
		     /db_xref="taxon:11676"
		     /country="USA: Northern California"
     gene	     <1..>1065
		     /gene="pol"
     CDS	     <1..>1065
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol polyprotein"
		     /protein_id="AAK35258.1"
		     /db_xref="GI:13735924"
		     /translation="PQITLWQRPIVTIKIGGQLKEALIDTGADDTVLEEMNLPGRWKP
		     KLIGGIGGFVKVRQYDQIPVEICGHKTIGTVLVGPTPANIIGRNLLTQIGCTLNFPIS
		     PIDTVPVKLKPGMDGPKVKQWPLTEEKIKALVEICAELEKDGKISKIGPENPYNTPVF
		     AIKKKNSTRWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPD
		     IVIYQYVDDLYVGSDLEIGQHRTKVEELRQHLWKWGFYTPDQKHQKEPPFLWMGYELH
		     PDKWTVQPIVLPEKDSWTVND"
BASE COUNT	401 a	 180 c	  229 g    250 t      5 other
ORIGIN
       1 cctcaaatca ctctttggca acgacccatc gtcacaataa agataggggg gcagctaaag 
      61 gaagctctaa tagatacagg agcagatgat acagtattag aagaaatgaa tttgccagga 
     121 agatggaaac caaaattgat agggggaatt ggaggttttg tcaaagtaag acaatatgat 
     181 cagatacccg tagaaatctg tggacataaa actataggta cagtgttagt aggacctaca 
     241 cctgccaaca taatcggaag aaatctgttg actcagattg gttgcacttt aaattttccc 
     301 attagtccta ttgacactgt accagtaaaa ttaaagccag gaatggatgg cccaaaagtt 
     361 aaacagtggc cattgacaga agaaaaaata aaagcattag tagaaatttg tgcagaattg 
     421 gaaaaggayg graaaatttc aaaaattggg cctgaaaatc catacaatac tccagtattt 
     481 gccataaaga aaaagaacag tactagatgg agraaattag tagatttcag agaacttaat 
     541 aagagaactc aagacttctg ggaagttcaa ttagggatac cacatcccgc agggttaaaa 
     601 aagaaaaagt cagtaacagt actggatgtg ggtgatgcat atttttcagt tcccttagat 
     661 gaagacttca ggaagtatac tgcctttacc atacctagya taaacaatga gacaccaggg 
     721 attagatatc agtacaatgt gcttccacag ggatggaaag gatcaccagc aatatttcaa 
     781 agtagcatga caaaaatctt agagcctttt agaaaacaaa atccagacat agttatctat 
     841 caatacgtgg atgatttgta tgtaggatct gayttagaaa tagggcagca tagaacaaaa 
     901 gtagaggaac tgagacagca tctgtggaag tggggatttt acacaccaga ccaaaaacac 
     961 cagaaagaac ctccattcct ttggatgggt tatgaactcc atcctgataa atggacagta 
    1021 cagcctatag tgctgccaga aaaagacagc tggactgtca atgac
//
last modified: Tue May 31 10:56 2022


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