View NCBI entry Download GenBank file Graphics View Download GFF3 File
LOCUS AY030423 999 bp RNA linear VRL 16-AUG-2001
DEFINITION HIV-1 isolate NC643-1997 from USA pol polyprotein (pol) gene,
partial cds
ACCESSION AY030423
VERSION AY030423.1 GI:13735883
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 999)
Show all sequences for reference 1
AUTHORS Shafer,R., Gonzales,M.J. and Brun-Vezinet,F.
TITLE Online comparison of HIV-1 drug resistance algorithms identifies
rates and causes of discordant interpretations
JOURNAL Antiviral Therapy 6 (Suppl. 1), 101 (2001)
REFERENCE 2 (bases 1 to 999)
Show all sequences for reference 2
AUTHORS Gonzales,M.J., Machekano,R.N. and Shafer,R.W.
TITLE Direct Submission
JOURNAL Submitted (10-APR-2001) Medicine, Division of Infectious Diseases &
Geographic Medicine, Stanford University Medical Center, 300
Pasteur Drive, S-156, Stanford, CA 94305, USA
REFERENCE 3
Show all sequences for reference 3
AUTHORS Gonzales,M.J., Machekano,R.N. and Shafer,R.W.
TITLE Human immunodeficiency virus type 1 reverse-transcriptase and
protease subtypes: classification, amino acid mutation patterns,
and prevalence in a northern California clinic-based population
JOURNAL J. Infect. Dis. 184 (8), 998-1006 (2001)
PUBMED 11574914
FEATURES Location/Qualifiers
source 1..999
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="NC643-1997"
/db_xref="taxon:11676"
/country="USA: Northern California"
gene <1..>999
/gene="pol"
CDS <1..>999
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol polyprotein"
/protein_id="AAK35238.1"
/db_xref="GI:13735884"
/translation="PQITLWQRPLVTIKVGGQLKEALLDTGADDTVLEEMNLPGRWKP
KMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPD
IVIYQYMDDLYVGSDLEIGQHRTRIEELRQHLLRWGFTTPDKKHQKEPPFLWMGYEL"
BASE COUNT 388 a 164 c 209 g 238 t
ORIGIN
1 cctcaaatca ctctttggca acgacccctc gtcacaataa aggtaggggg gcaactaaag
61 gaagctctat tagatacagg agcagatgat acagtattag aagaaatgaa tttgccagga
121 agatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtatgat
181 cagatactca tagaaatctg tggacataaa gctataggta cagtattagt aggacctaca
241 cctgtcaaca taattggaag aaatctgttg actcagattg gttgcacctt aaattttccc
301 attagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaagtt
361 aaacaatggc cattgacaga agaaaaaata aaagcattag tagaaatttg tacagaaatg
421 gaaaaggaag ggaaaatttc aaaaattggg cctgaaaatc catacaatac tccagtattt
481 gccataaaga aaaaagacag tactaaatgg agaaaattag tagattttag agagcttaat
541 aaaagaactc aagacttctg ggaagttcaa ttaggaatac cacatccagc agggttaaaa
601 aagaaaaaat cagtaacagt actggatgtg ggtgatgcat acttttcggt tcccttagat
661 gaagacttca ggaagtatac tgcatttacc atacctagta taaacaatga gacaccaggg
721 attagatatc agtacaatgt gctcccacag ggatggaaag gttcaccagc aatattccaa
781 agtagcatga caaaaatctt agagcctttc agaaaacaaa atccagacat agtcatctat
841 caatacatgg atgatttgta tgtaggatct gacttagaaa tagggcagca tagaacaaga
901 atagaggaat tgagacaaca tctgttgagg tgggggttta ccacaccaga caaaaaacat
961 cagaaagaac ctccattcct ttggatgggt tatgaactc
//
last modified: Tue May 31 10:56 2022