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LOCUS AM696242 537 bp RNA linear VRL 29-OCT-2007
DEFINITION Simian immunodeficiency virus partial env gene for envelope
glycoprotein V2-V5 region, genomic RNA, isolate SIVcpzMB788
ACCESSION AM696242
VERSION AM696242.1 GI:158935226
KEYWORDS env gene; envelope glycoprotein; gp120.
SOURCE Simian immunodeficiency virus (SIV)
ORGANISM Simian immunodeficiency virus Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1
Show all sequences for reference 1
AUTHORS Van Heuverswyn,F., Heuverswyn,F.V., Li,Y., Bailes,E., Neel,C.,
Lafay,B., Keele,B.F., Shaw,K.S., Takehisa,J., Kraus,M.H., Loul,S.,
Butel,C., Liegeois,F., Yangda,B., Sharp,P.M., Mpoudi-Ngole,E.,
Delaporte,E., Hahn,B.H. and Peeters,M.
TITLE Genetic diversity and phylogeographic clustering of SIVcpzPtt in
wild chimpanzees in Cameroon
JOURNAL Virology 368 (1), 155-171 (2007)
PUBMED 17651775
REFERENCE 2 (bases 1 to 537)
Show all sequences for reference 2
AUTHORS Van Heuverswyn,F.
TITLE Direct Submission
JOURNAL Submitted (17-APR-2007) Van Heuverswyn F., UMR145, I.R.D., 911
Avenue Agropolis, 34394 Montpellier Cedex 5, FRANCE
FEATURES Location/Qualifiers
source 1..537
/organism="Simian immunodeficiency virus"
/mol_type="genomic RNA"
/isolate="SIVcpzMB788"
/isolation_source="fecal matter"
/host="Pan troglodytes troglodytes (wild)"
/db_xref="taxon:11723"
/country="Cameroon"
gene <1..>537
/gene="env"
CDS <1..>537
/gene="env"
/note="V2-V5 region"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="CAM90452.1"
/db_xref="GI:158935227"
/translation="LRCNDVNFTGSGSCNNVSSVQCTHGIRPVVTTQLLLNGSLSKGD
IMVRVKNKTDNVNTHIVQLKESILIHCIRVGNKTVKGIPIGPGQHFYSTETIVEDTRK
AHCNISKTRWEAMLMKVADNLANLYNTTNIAFLPSSGGDPEITTHSFNCGGEFFYCNT
SALFNTSLAELNKTRGNNH"
BASE COUNT 197 a 92 c 107 g 141 t
ORIGIN
1 ttgagatgta atgatgtaaa cttcactgga tcaggttcat gcaacaatgt ttcgtcagta
61 caatgtacac atggaatcag accagttgtt acaactcagt tgcttctaaa tggtagtcta
121 tcaaaaggtg acataatggt tagagttaag aacaaaacag ataatgttaa cacacacata
181 gtacagttaa aagaaagtat attaattcac tgtattaggg taggtaacaa gacagttaag
241 ggtattccca tagggccagg tcaacatttc tacagtacag aaactatagt agaagataca
301 agaaaagctc attgtaacat tagtaaaaca agatgggagg caatgttaat gaaagtggct
361 gacaatttgg ctaacttgta caacacaaca aacatagcct ttctaccttc cagcggggga
421 gatccagaga taacaacgca ctcctttaat tgtggagggg aattctttta ttgcaacaca
481 tcagcattat ttaatacatc attggcagag ctcaataaaa ctcgggggaa caatcac
//
last modified: Tue May 31 10:56 2022