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LOCUS	    AM296492		     738 bp    RNA     linear	VRL 10-NOV-2006
DEFINITION  Simian immunodeficiency virus partial env gene for envelope
	    glycoprotein and partial nef gene for negative factor protein,
	    genomic RNA, isolate SIVgorCP1436
ACCESSION   AM296492
VERSION     AM296492.1 GI:117910811
KEYWORDS    env gene; envelope glycoprotein; nef gene; negative factor protein.
SOURCE	    Simian immunodeficiency virus
  ORGANISM  Simian immunodeficiency virus Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1
            Show all sequences for reference 1
  AUTHORS   Van Heuverswyn,F., Li,Y., Neel,C., Bailes,E., Keele,B.F., Liu,W.,
	    Loul,S., Butel,C., Liegeois,F., Bienvenue,Y., Ngolle,E.M.,
	    Sharp,P.M., Shaw,G.M., Delaporte,E., Hahn,B.H. and Peeters,M.
  TITLE     Human immunodeficiency viruses: SIV infection in wild gorillas
  JOURNAL   Nature 444 (7116), 164 (2006)
  PUBMED    17093443
REFERENCE   2 (bases 1 to 738)
            Show all sequences for reference 2
  AUTHORS   Van Heuverswyn,F.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-AUG-2006) Van Heuverswyn F., UMR145, IRD, 911 Avenue
	    Agropolis, 34394 Montpellier Cedex 5, FRANCE
COMMENT     All of the Gorilla SIV sequences from this publication were Gorilla
	    gorilla gorilla (Western lowlands gorilla) subspecies. SIV-positive
	    samples from two different wildlife areas labeled CP and BQ, over
	    400 kilometers apart, were the same areas where chimpanzees were
	    sampled without finding any SIV-CPZ seropositive chimpanzees.
FEATURES             Location/Qualifiers
     source	     1..738
		     /organism="Simian immunodeficiency virus"
		     /mol_type="genomic RNA"
		     /isolate="SIVgorCP1436"
		     /isolation_source="fecal matter"
		     /host="Gorilla gorilla (wild)"
		     /db_xref="taxon:11723"
		     /country="Cameroon"
     gene	     <1..460
		     /gene="env"
     CDS	     <1..460
		     /gene="env"
		     /note="gp41 region of env"
		     /codon_start="2"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="CAL30197.1"
		     /db_xref="GI:117910812"
		     /translation="YSPLSFQIPGRIQGPAGIVPGIEEEGGGADKSRSIRLLDGFLPL
		     VWDDLKTLVVWIYQTLATLISGIKELTILLIEQLSRFLRKTTDLLRDCFALVGYWGQE
		     LKQSAISLLDTVAVWTGNWTDQVIEVARRIGRGILNIPRRIRQGLERSLL"
     gene	     460..>738
		     /gene="nef"
     CDS	     460..>738
		     /gene="nef"
		     /codon_start="1"
		     /transl_table="1"
		     /product="negative factor protein"
		     /protein_id="CAL30198.1"
		     /db_xref="GI:117910813"
		     /translation="MGNAWKKSSLVGWPAVRDRMHQTNPEPEQPAPGVGIISRELAKG
		     KGIPAKYNPTNNASLAFLDAHDEEEVGFPVRPQVSVRPMTYKAAFDLSF"
BASE COUNT	245 a	 146 c	  188 g    159 t
ORIGIN
       1 atactcacca ctgtcatttc agatccctgg ccggattcag ggcccagcag gaatagtacc 
      61 aggaatagaa gaagaaggtg gaggagcaga caaaagcaga tcgatcagat tgctggacgg 
     121 attcttgcct ctagtgtggg acgatctcaa gactctggtt gtgtggatct accagacatt 
     181 agccacctta atatcaggga tcaaggagct gacaatcctc ctgatcgagc agctgagcag 
     241 attcctgagg aaaacaactg acttgctaag agactgcttc gctttagttg gatactgggg 
     301 acaagagctt aaacaaagtg ctattagctt gctagacact gtggcagtct ggactgggaa 
     361 ttggactgat caagtaatag aagtagctag gagaatagga agaggaatat tgaacattcc 
     421 aagaagaatt aggcaggggc tagaaagaag cttattataa tggggaatgc ctggaaaaag 
     481 agtagcttag tagggtggcc agcagtgaga gacagaatgc atcaaactaa ccctgagcca 
     541 gaacaaccgg ctccaggagt aggtataatt tctagagaac tagcaaaagg aaaaggaata 
     601 cctgcaaaat ataacccaac aaacaatgcc tccttagcat tcctagatgc acacgatgag 
     661 gaggaagtag gatttccagt tagaccccaa gtatctgtaa gacccatgac ttataaagca 
     721 gcatttgacc tcagcttc
//
last modified: Tue May 31 10:56 2022


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