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LOCUS AM260238 1802 bp DNA linear VRL 02-FEB-2007
DEFINITION Human immunodeficiency virus type 1 proviral partial gene for
gag-pol fusion polyprotein precursor, isolate 02BU.U2202
ACCESSION AM260238
VERSION AM260238.1 GI:124482926
KEYWORDS gag polyprotein; gag-pol fusion; pol polyprotein.
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1
Show all sequences for reference 1
AUTHORS Vidal,N., Niyongabo,T., Nduwimana,J., Butel,C., Ndayiragije,A.,
Wakana,J., Nduwimana,M., Delaporte,E. and Peeters,M.
TITLE HIV Type 1 Diversity and Antiretroviral Drug Resistance Mutations
in Burundi
JOURNAL AIDS Res. Hum. Retroviruses 23 (1), 175-180 (2007)
PUBMED 17263648
REFERENCE 2 (bases 1 to 1802)
Show all sequences for reference 2
AUTHORS Vidal,N.
TITLE Direct Submission
JOURNAL Submitted (27-MAR-2006) Vidal N., UMR145, I.R.D, 911 avenue
Agropolis, 34394 Montpellier, FRANCE
FEATURES Location/Qualifiers
source 1..1802
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="02BU.U2202"
/db_xref="taxon:11676"
/country="Burundi"
/note="subtype: C"
CDS <1..>1802
/codon_start="1"
/transl_table="1"
/product="gag-pol fusion polyprotein precursor"
/protein_id="CAK18251.1"
/db_xref="GI:124482927"
/translation="FFRENLAFPQGGEAREFPSEQXRANSPTTPSGQARANSPTSREL
QVRGTLSEAGAEGQGTLNFPQITLWQRPLVSIKVGGQVREALLDTGADDTVLEDINLP
GKWKPKMIGGIGGFIKVRQYDQIVIEICGKKAXGSVLVGPTPVNIIGRNMLTQLGCTL
NFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALIAICEEMEKEGKITKIGPENPY
NTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKXSVTVLDVGDA
YFSVPLDEDFRKYTAFTIPSINNETPGVRYQYNVLPQGWKGSPSIFQSSMTKILEPFR
TQNPXIVIYQYMDDLYVGSDLEIGQHRAKIEELREHLLKWGFTTPDKKHQKEPPFLWM
GYELHPDKWTVQPIQLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGAKA
LTDIXPLTEEAELELAENREXLREPVHGXYYDPSKDLIAEIQKQGQDQWTYQIYQEPF
KNLKTGKYAKRRTAHTNDVKQLTEAVQKIALESIVIWGKTPKFRLPIQKETWEAWWTD
YWQATWIPEWEFVNTPPLVKLWYQLEKEPIAGENS"
BASE COUNT 663 a 327 c 398 g 381 t 33 other
ORIGIN
1 ttttttaggg aaaatytggc cttcccacaa gggggggagg ccagggaatt tccttcagaa
61 cagrccagag ccaacagccc caccactcct tcagggcagg ccagagccaa cagccccacc
121 agcagagagc ttcaggttcg aggaaccctc tccgaagcag gagccgaagg acarggaacc
181 cttaatttcc ctcaaatcac tctttggcag cgaccccttg tctcaataaa agtaggggga
241 caggtaaggg aggctctctt agacacagga gcagatgaya cagtattaga agayataaat
301 ttgcctggaa aatggaaacc aaaaatgata gggggaattg gaggttttat yaaagtaaga
361 cartatgatc aaatagttat agaaatttgt ggaaaaaagg ctatrggttc agtattagta
421 ggacctacrc ctgtcaayat aattggaaga aatatgttga ctcagcttgg atgtacacta
481 aattttccaa ttagtcccat tgaaacwgta ccagtaaaat taaagccagg watggatggc
541 ccaaaggtca aacaatggcc attgacagaa gaaaaaataa aagcattaat agcaatttgt
601 gaagagatgg araaggaagg aaaaattaca aaaattgggc ctgaaaatcc ctataacact
661 ccagtatttg ccataaaaaa gaaggacagt actaagtgga gaaagttagt agatttcagg
721 gagctcaata aaagaactca agacttctgg gaagttcaat tagggatacc acacccagca
781 gggttaaaaa agaaaaratc agtgacagta ctrgatgtgg gggatgcata tttctcagtt
841 cctttrgatg argacttcag gaaatatact gcattcacca taccwagtat aaacaatgaa
901 acaccaggag ttagatatca atataatgtr cttccacagg gatggaaagg atcaccatca
961 atattccaga gtagcatgac aaaaatctta gagcccttta ggacacaaaa cccagamata
1021 gtyatctatc aatatatgga tgacttgtat gtaggatctg acttagaaat agggcaacat
1081 agagcaaaaa tagaggaatt aagagaacat ctrttgaagt ggggatttac cactccagac
1141 aagaagcatc araaagaacc tccatttctt tggatggggt atgaacttca tcctgacaaa
1201 tggacagtac agcctataca gctgccagaa aargatagct ggactgtcaa tgatatacag
1261 aagttagtgg gaaaattaaa ctgggcaagt cagatttacc cagggattaa ggtraagcaa
1321 ytgtgtaaac tccttagggg agccaaagca ctaacagaca tartaccact gactgaagaa
1381 gcagaattag arttggcaga gaacagggaa aktctaagag aaccagtaca tggrgyatat
1441 tatgacccat caaaagactt aatagctgaa atacagaaac aggggcagga ccaatggacr
1501 tatcaaattt atcaagaacc attcaaaaat ctgaaaacag gaaagtatgc aaaaaggagg
1561 actgcccaca ctaatgatgt aaaacagtta acagaggcag tgcaaaaaat agccctggaa
1621 agcatagtaa tatggggaaa aactcctaaa tttagattac ccatccagaa agaaacatgg
1681 gargcatggt ggacagacta ttggcaagcc acctggattc ctgagtggga gtttgtcaat
1741 actcctcccc tagtaaagtt atggtaccag ctggagaaag aacccatagc aggagagaac
1801 tc
//
last modified: Tue May 31 10:56 2022