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LOCUS	    AF544575		     297 bp    DNA     linear	VRL 27-MAR-2003
DEFINITION  HIV-1 isolate 4858-112400 from USA protease (pol) gene, partial cds
ACCESSION   AF544575
VERSION     AF544575.1 GI:23507596
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 297)
            Show all sequences for reference 1
  AUTHORS   Wu,T.D., Schiffer,C.A., Gonzales,M.J., Taylor,J., Kantor,R.,
	    Chou,S., Israelski,D., Zolopa,A.R., Fessel,W.J. and Shafer,R.W.
  TITLE     Mutation patterns and structural correlates in human
	    immunodeficiency virus type 1 protease following different protease
	    inhibitor treatments.
  JOURNAL   J. Virol. 77 (8), 4836-47 (2003)
  PUBMED    12663790
REFERENCE   2 (bases 1 to 297)
            Show all sequences for reference 2
  AUTHORS   Wu,T.D., Schiffer,C.A., Taylor,J., Gonzales,M.J., Kantor,R.,
	    Chou,S., Israelski,D., Zolopa,A.R., Fessel,W.J. and Shafer,R.W.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-SEP-2002) Medicine/Div of Infectious Diseases,
	    Stanford University, 300 Pasteur Drive, Grant Bldg, Room S-156,
	    Stanford, CA 94305, USA
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Rhee,S.-Y., Fessel,W.J., Liu,T.F., Marlowe,N.M., Rowland,C.M.,
	    Rode,R.A., Vandamme,A.-M., Van Laethem,K., Brun-Vezinet,F.,
	    Calvez,V., Taylor,J., Hurley,L., Horberg,M. and Shafer,R.W.
  TITLE     Predictive value of HIV-1 genotypic resistance test interpretation
	    algorithms.
  JOURNAL   J. Infect. Dis.. 200(3); 453-63 (2009)
  PUBMED    19552527
FEATURES             Location/Qualifiers
     source	     1..297
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="4858-112400"
		     /db_xref="taxon:11676"
		     /country="USA"
     gene	     <1..>297
		     /gene="pol"
     CDS	     <1..>297
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="protease"
		     /protein_id="AAN38239.1"
		     /db_xref="GI:23507597"
		     /translation="PQITLWQRPVVTIKIGGQLKEALLDTGADDTVLEEMSLPGKWKP
		     KMIGGVGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNF"
BASE COUNT	106 a	  47 c	   69 g     75 t
ORIGIN
       1 cctcaaatca ctctttggca acgacccgtt gtcacaataa aaataggggg gcaactgaag 
      61 gaagctctat tagatacagg agcagatgat acagtgttag aagaaatgag tttgccagga 
     121 aaatggaaac caaaaatgat agggggagtt ggaggtttta tcaaagtaag acagtatgat 
     181 cagataccca tagaaatctg tgggcataaa gctataggta cagtattaat aggacctaca 
     241 cctgtcaaca taattggaag aaatctgttg actcagcttg gttgcacttt aaatttt
//
last modified: Tue May 31 10:56 2022


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