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LOCUS AF536908 431 bp RNA linear VRL 18-NOV-2003
DEFINITION HIV-1 clone PHI patient Z29 from USA isolation-source saliva
envelope glycoprotein (env) gene, partial cds
ACCESSION AF536908
VERSION AF536908.1 GI:24637913
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 431)
Show all sequences for reference 1
AUTHORS Freel,S.A., Fiscus,S.A., Pilcher,C.D., Menezes,P., Giner,J.,
Patrick,E., Lennox,J.L., Hicks,C.B., Eron,J.J. Jr.. and
Shugars,D.C.
TITLE Envelope diversity, coreceptor usage and syncytium-inducing
phenotype of HIV-1 variants in saliva and blood during primary
infection
JOURNAL AIDS 17 (14), 2025-2033 (2003)
PUBMED 14502005
REFERENCE 2 (bases 1 to 431)
Show all sequences for reference 2
AUTHORS Shugars,D.C., Freel,S.A., Fiscus,S.A., Pilcher,C.D., Menezes,P.,
Giner,J., Patrick,E., Lennox,J.L., Hicks,C.B. and Eron,J.J.
TITLE Direct Submission
JOURNAL Submitted (07-AUG-2002) Schools of Dentistry and Medicine,
University of North Carolina at Chapel Hill, University of North
Carolina at Chapel Hill, Chapel Hill, NC 27599, USA
FEATURES Location/Qualifiers
source 1..431
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolation_source="saliva"
/db_xref="taxon:11676"
/clone="PHI patient Z29"
/country="USA"
gene <1..>431
/gene="env"
CDS <1..>431
/gene="env"
/note="V1/V2 loop"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="AAN63923.1"
/db_xref="GI:24637914"
/translation="LWDQSLKPCVKLTPLCVTLNCTNATSINCTNVNSTDTANCTVNN
STDEMKNCSFDITTSVRDRTKKEYALFYSLDIVQIEDKSNKNKTDNYTSYRLIKCNTS
VITQACPKVSFEPIPIHYCTPAGFAILKCNDKKFNGTGPCK"
BASE COUNT 161 a 77 c 74 g 119 t
ORIGIN
1 ttatgggatc aaagcctaaa gccatgtgta aaattaaccc cactctgcgt tactttaaat
61 tgcactaatg ccactagtat aaattgcact aatgtcaata gtactgatac agctaattgc
121 actgtgaata atagcacaga tgaaatgaaa aactgctctt tcgatatcac cacaagtgta
181 agagatagga caaagaaaga atatgctctc ttctatagcc ttgatatagt acaaatagag
241 gataagagta ataagaataa gactgataat tatactagct atagattaat aaagtgtaat
301 acctcagtca ttacacaagc ctgtccaaag gtatcctttg agccaattcc catacattac
361 tgtaccccgg ctggttttgc gattctaaag tgtaatgata agaagttcaa tggaacagga
421 ccatgtaaaa a
//
last modified: Tue May 31 10:56 2022