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LOCUS AF536878 409 bp RNA linear VRL 18-NOV-2003
DEFINITION HIV-1 isolate 1 clone PHI patient Z11 from USA isolation-source
saliva nonfunctional envelope glycoprotein (env) gene, partial cds
ACCESSION AF536878
VERSION AF536878.1 GI:24637854
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 409)
Show all sequences for reference 1
AUTHORS Freel,S.A., Fiscus,S.A., Pilcher,C.D., Menezes,P., Giner,J.,
Patrick,E., Lennox,J.L., Hicks,C.B., Eron,J.J. Jr.. and
Shugars,D.C.
TITLE Envelope diversity, coreceptor usage and syncytium-inducing
phenotype of HIV-1 variants in saliva and blood during primary
infection
JOURNAL AIDS 17 (14), 2025-2033 (2003)
PUBMED 14502005
REFERENCE 2 (bases 1 to 409)
Show all sequences for reference 2
AUTHORS Shugars,D.C., Freel,S.A., Fiscus,S.A., Pilcher,C.D., Menezes,P.,
Giner,J., Patrick,E., Lennox,J.L., Hicks,C.B. and Eron,J.J.
TITLE Direct Submission
JOURNAL Submitted (07-AUG-2002) Schools of Dentistry and Medicine,
University of North Carolina at Chapel Hill, University of North
Carolina at Chapel Hill, Chapel Hill, NC 27599, USA
FEATURES Location/Qualifiers
source 1..409
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="1"
/isolation_source="saliva"
/db_xref="taxon:11676"
/clone="PHI patient Z11"
/country="USA"
gene <1..>409
/gene="env"
misc_feature <1..>409
/gene="env"
/note="nonfunctional envelope glycoprotein; contains
premature stop codons; V1/V2 loop"
BASE COUNT 141 a 76 c 77 g 115 t
ORIGIN
1 ttatgggatc aaagcctaaa gccatgtgta gaattaaccc cactctgtgt tactttagag
61 tgcactaatg ctaatgctac tgaaaccact aatagtagca ctattaatgc cactataagc
121 aagggaatgg acatgaaaaa ctgctctttc aatgtcacca cagacgtgag agataggatg
181 aagaaagaat ctgcactttt ttatagcctt gatttagtaa aaatgaatga taatgataat
241 gataatggta cctataggtt gataagttgc aatacctcag tcattacaca ggcctgtcca
301 aagataaact ttgagccaat tcccatacat tattgtgccc cagctggttt tgcgattcct
361 aaagtgtaat aataagacat tcaatggaag tggaccatgt acaaatgcc
//
last modified: Tue May 31 10:56 2022