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LOCUS	    AF459173		     965 bp    RNA     linear	VRL 24-JUL-2002
DEFINITION  HIV-1 isolate patient AD-82 from USA pol protein (pol) gene,
	    partial cds
ACCESSION   AF459173
VERSION     AF459173.1 GI:21952146
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 965)
            Show all sequences for reference 1
  AUTHORS   Simon,V., Vanderhoeven,J., Hurley,A., Ramratnam,B., Louie,M.,
	    Dawson,K., Parkin,N., Boden,D. and Markowitz,M.
  TITLE     Evolving patterns of HIV-1 resistance to antiretroviral agents in
	    newly infected individuals
  JOURNAL   AIDS 16 (11), 1511-1519 (2002)
  PUBMED    12131189
REFERENCE   2 (bases 1 to 965)
            Show all sequences for reference 2
  AUTHORS   Simon,V., Vanderhoeven,J., Hurley,A., Ramratnam,B., Louie,M.,
	    Dawson,K., Parkin,N., Boden,D. and Markowitz,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-DEC-2001) Aaron Diamond AIDS Research Center, The
	    Rockefeller University, 455 First Avenue, New York City, NY 10016,
	    USA
COMMENT     Clinical history consistent with acute retroviral syndrome within
	    90 days of presentation. Negative HIV-1 serology documented within
	    120 days of screening.
FEATURES             Location/Qualifiers
     source	     1..965
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="patient AD-82"
		     /db_xref="taxon:11676"
		     /country="USA"
     gene	     <1..>965
		     /gene="pol"
     CDS	     <1..>965
		     /gene="pol"
		     /note="contains protease and reverse transcriptase;
		     sequence generated using in-house assay"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AAM82496.1"
		     /db_xref="GI:21952147"
		     /translation="PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKP
		     KMIGGIGGFIKVRQYDQVPIEICGHKAIGTVLIGPTPINIIGRNLLTQLGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPD
		     IVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGFTTPDKKHQ"
BASE COUNT	377 a	 158 c	  204 g    226 t
ORIGIN
       1 cctcagatca ctctttggca gcgacccctc gtcacaataa agataggggg gcaactaaag 
      61 gaagctctat tagatacagg agcagatgat acagtattag aagaaatgag cttgccagga 
     121 agatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtatgat 
     181 caagtaccca tagaaatctg tggacataaa gctataggta cagtattaat aggacctaca 
     241 cctatcaata taattggaag aaatctgttg actcagcttg gttgcacctt aaattttccc 
     301 attagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaagtt 
     361 aaacaatggc cattgacaga agaaaaaata aaagcattag tagaaatttg cacagagatg 
     421 gaaaaggaag ggaaaatttc aaaaattggg cctgaaaatc catacaatac tccagtattt 
     481 gccataaaga aaaaagacag tactaaatgg agaaaattag tagatttcag agaacttaat 
     541 aagagaactc aagacttctg ggaagttcaa ttaggaatac cacatcccgc aggattaaaa 
     601 aagaaaaaat cagtaacagt actggatgtg ggtgatgcat atttttcagt tcccttagat 
     661 aaggacttca ggaagtatac tgcgtttacc atacctagta taaacaatga gacaccgggg 
     721 attagatatc agtacaatgt gcttccacag ggatggaaag gatcaccagc aatattccaa 
     781 agtagcatga caaaaatctt agagcctttt agaaaacaaa atccagacat agttatctat 
     841 cagtacatgg atgatttgta tgtaggatct gacttagaaa tagggcagca tagaacaaaa 
     901 atagaggaac tgagacagca tctgttgagg tggggattta ccacaccaga caagaaacat 
     961 cagaa
//
last modified: Tue May 31 10:56 2022


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