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LOCUS AF459173 965 bp RNA linear VRL 24-JUL-2002
DEFINITION HIV-1 isolate patient AD-82 from USA pol protein (pol) gene,
partial cds
ACCESSION AF459173
VERSION AF459173.1 GI:21952146
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 965)
Show all sequences for reference 1
AUTHORS Simon,V., Vanderhoeven,J., Hurley,A., Ramratnam,B., Louie,M.,
Dawson,K., Parkin,N., Boden,D. and Markowitz,M.
TITLE Evolving patterns of HIV-1 resistance to antiretroviral agents in
newly infected individuals
JOURNAL AIDS 16 (11), 1511-1519 (2002)
PUBMED 12131189
REFERENCE 2 (bases 1 to 965)
Show all sequences for reference 2
AUTHORS Simon,V., Vanderhoeven,J., Hurley,A., Ramratnam,B., Louie,M.,
Dawson,K., Parkin,N., Boden,D. and Markowitz,M.
TITLE Direct Submission
JOURNAL Submitted (17-DEC-2001) Aaron Diamond AIDS Research Center, The
Rockefeller University, 455 First Avenue, New York City, NY 10016,
USA
COMMENT Clinical history consistent with acute retroviral syndrome within
90 days of presentation. Negative HIV-1 serology documented within
120 days of screening.
FEATURES Location/Qualifiers
source 1..965
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="patient AD-82"
/db_xref="taxon:11676"
/country="USA"
gene <1..>965
/gene="pol"
CDS <1..>965
/gene="pol"
/note="contains protease and reverse transcriptase;
sequence generated using in-house assay"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AAM82496.1"
/db_xref="GI:21952147"
/translation="PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKP
KMIGGIGGFIKVRQYDQVPIEICGHKAIGTVLIGPTPINIIGRNLLTQLGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPD
IVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGFTTPDKKHQ"
BASE COUNT 377 a 158 c 204 g 226 t
ORIGIN
1 cctcagatca ctctttggca gcgacccctc gtcacaataa agataggggg gcaactaaag
61 gaagctctat tagatacagg agcagatgat acagtattag aagaaatgag cttgccagga
121 agatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtatgat
181 caagtaccca tagaaatctg tggacataaa gctataggta cagtattaat aggacctaca
241 cctatcaata taattggaag aaatctgttg actcagcttg gttgcacctt aaattttccc
301 attagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaagtt
361 aaacaatggc cattgacaga agaaaaaata aaagcattag tagaaatttg cacagagatg
421 gaaaaggaag ggaaaatttc aaaaattggg cctgaaaatc catacaatac tccagtattt
481 gccataaaga aaaaagacag tactaaatgg agaaaattag tagatttcag agaacttaat
541 aagagaactc aagacttctg ggaagttcaa ttaggaatac cacatcccgc aggattaaaa
601 aagaaaaaat cagtaacagt actggatgtg ggtgatgcat atttttcagt tcccttagat
661 aaggacttca ggaagtatac tgcgtttacc atacctagta taaacaatga gacaccgggg
721 attagatatc agtacaatgt gcttccacag ggatggaaag gatcaccagc aatattccaa
781 agtagcatga caaaaatctt agagcctttt agaaaacaaa atccagacat agttatctat
841 cagtacatgg atgatttgta tgtaggatct gacttagaaa tagggcagca tagaacaaaa
901 atagaggaac tgagacagca tctgttgagg tggggattta ccacaccaga caagaaacat
961 cagaa
//
last modified: Tue May 31 10:56 2022