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LOCUS AF459111 965 bp RNA linear VRL 24-JUL-2002
DEFINITION HIV-1 isolate patient AD-11 from USA pol protein (pol) gene,
partial cds
ACCESSION AF459111
VERSION AF459111.1 GI:21952022
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 965)
Show all sequences for reference 1
AUTHORS Simon,V., Vanderhoeven,J., Hurley,A., Ramratnam,B., Louie,M.,
Dawson,K., Parkin,N., Boden,D. and Markowitz,M.
TITLE Evolving patterns of HIV-1 resistance to antiretroviral agents in
newly infected individuals
JOURNAL AIDS 16 (11), 1511-1519 (2002)
PUBMED 12131189
REFERENCE 2 (bases 1 to 965)
Show all sequences for reference 2
AUTHORS Simon,V., Vanderhoeven,J., Hurley,A., Ramratnam,B., Louie,M.,
Dawson,K., Parkin,N., Boden,D. and Markowitz,M.
TITLE Direct Submission
JOURNAL Submitted (17-DEC-2001) Aaron Diamond AIDS Research Center, The
Rockefeller University, 455 First Avenue, New York City, NY 10016,
USA
COMMENT Clinical history consistent with acute retroviral syndrome within
90 days of presentation. Negative HIV-1 serology documented within
120 days of screening.
FEATURES Location/Qualifiers
source 1..965
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="patient AD-11"
/db_xref="taxon:11676"
/country="USA"
gene <1..>965
/gene="pol"
CDS <1..>965
/gene="pol"
/note="contains protease and reverse transcriptase;
sequence generated using in-house assay"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AAM82434.1"
/db_xref="GI:21952023"
/translation="PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKP
KMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPIS
PIETVPVRLKPGMDGPKVKQWPLTEKKIKALVEICAEMEKEGKISKIGPENPYNTPVF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKQKKSVTVLDVGDAYFSVP
LDKDFRKYTAFTIPSVNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPD
IVIYQYMDDLYVGSDLEIGQHRAKIEELRPHLLRWGFTTPDKKHQ"
BASE COUNT 376 a 155 c 203 g 231 t
ORIGIN
1 cctcagatca ctctttggca acgacccctc gtcacaataa agataggggg gcaactaaag
61 gaagctctat tagatacagg agcagatgat acagttttag aagaaatgaa tttgccagga
121 agatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtatgat
181 cagataccca tagaaatctg tggacataaa gctataggta cagtattagt aggacctaca
241 cctgtcaaca taattggaag aaatctgttg actcagattg gttgcacttt aaattttccc
301 attagtccta ttgaaactgt accagtaaga ttaaagccag gaatggatgg cccaaaagtc
361 aaacaatggc cattgacaga aaaaaaaata aaagcattag tagaaatttg tgcagaaatg
421 gaaaaggaag gaaaaatttc aaagattggg cctgaaaacc catacaatac tccagtattt
481 gccataaaga aaaaagacag tactaaatgg agaaaattag tagatttcag agaacttaat
541 aagagaactc aagatttctg ggaagttcaa ttaggaatac cacatcctgc agggttaaaa
601 cagaaaaaat cagtaacagt attggatgtg ggtgatgcat atttttcagt tcccttagat
661 aaggacttca ggaagtatac tgcatttacc atacctagtg taaacaatga gacaccaggg
721 attagatatc agtacaatgt gcttccacag ggatggaagg gatcaccagc aatattccaa
781 agtagcatga caaaaatttt agagcctttt agaaaacaga atccagacat agttatctat
841 caatacatgg atgatttgta tgtaggatct gacttagaaa tagggcagca tagagcaaaa
901 atagaggaac tgagaccaca tctgttaagg tggggattta ccacaccaga caaaaaacat
961 cagaa
//
last modified: Tue May 31 10:56 2022