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LOCUS	    AF459111		     965 bp    RNA     linear	VRL 24-JUL-2002
DEFINITION  HIV-1 isolate patient AD-11 from USA pol protein (pol) gene,
	    partial cds
ACCESSION   AF459111
VERSION     AF459111.1 GI:21952022
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 965)
            Show all sequences for reference 1
  AUTHORS   Simon,V., Vanderhoeven,J., Hurley,A., Ramratnam,B., Louie,M.,
	    Dawson,K., Parkin,N., Boden,D. and Markowitz,M.
  TITLE     Evolving patterns of HIV-1 resistance to antiretroviral agents in
	    newly infected individuals
  JOURNAL   AIDS 16 (11), 1511-1519 (2002)
  PUBMED    12131189
REFERENCE   2 (bases 1 to 965)
            Show all sequences for reference 2
  AUTHORS   Simon,V., Vanderhoeven,J., Hurley,A., Ramratnam,B., Louie,M.,
	    Dawson,K., Parkin,N., Boden,D. and Markowitz,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-DEC-2001) Aaron Diamond AIDS Research Center, The
	    Rockefeller University, 455 First Avenue, New York City, NY 10016,
	    USA
COMMENT     Clinical history consistent with acute retroviral syndrome within
	    90 days of presentation. Negative HIV-1 serology documented within
	    120 days of screening.
FEATURES             Location/Qualifiers
     source	     1..965
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="patient AD-11"
		     /db_xref="taxon:11676"
		     /country="USA"
     gene	     <1..>965
		     /gene="pol"
     CDS	     <1..>965
		     /gene="pol"
		     /note="contains protease and reverse transcriptase;
		     sequence generated using in-house assay"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AAM82434.1"
		     /db_xref="GI:21952023"
		     /translation="PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKP
		     KMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPIS
		     PIETVPVRLKPGMDGPKVKQWPLTEKKIKALVEICAEMEKEGKISKIGPENPYNTPVF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKQKKSVTVLDVGDAYFSVP
		     LDKDFRKYTAFTIPSVNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPD
		     IVIYQYMDDLYVGSDLEIGQHRAKIEELRPHLLRWGFTTPDKKHQ"
BASE COUNT	376 a	 155 c	  203 g    231 t
ORIGIN
       1 cctcagatca ctctttggca acgacccctc gtcacaataa agataggggg gcaactaaag 
      61 gaagctctat tagatacagg agcagatgat acagttttag aagaaatgaa tttgccagga 
     121 agatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtatgat 
     181 cagataccca tagaaatctg tggacataaa gctataggta cagtattagt aggacctaca 
     241 cctgtcaaca taattggaag aaatctgttg actcagattg gttgcacttt aaattttccc 
     301 attagtccta ttgaaactgt accagtaaga ttaaagccag gaatggatgg cccaaaagtc 
     361 aaacaatggc cattgacaga aaaaaaaata aaagcattag tagaaatttg tgcagaaatg 
     421 gaaaaggaag gaaaaatttc aaagattggg cctgaaaacc catacaatac tccagtattt 
     481 gccataaaga aaaaagacag tactaaatgg agaaaattag tagatttcag agaacttaat 
     541 aagagaactc aagatttctg ggaagttcaa ttaggaatac cacatcctgc agggttaaaa 
     601 cagaaaaaat cagtaacagt attggatgtg ggtgatgcat atttttcagt tcccttagat 
     661 aaggacttca ggaagtatac tgcatttacc atacctagtg taaacaatga gacaccaggg 
     721 attagatatc agtacaatgt gcttccacag ggatggaagg gatcaccagc aatattccaa 
     781 agtagcatga caaaaatttt agagcctttt agaaaacaga atccagacat agttatctat 
     841 caatacatgg atgatttgta tgtaggatct gacttagaaa tagggcagca tagagcaaaa 
     901 atagaggaac tgagaccaca tctgttaagg tggggattta ccacaccaga caaaaaacat 
     961 cagaa
//
last modified: Tue May 31 10:56 2022


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