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LOCUS	    AF459102		     965 bp    RNA     linear	VRL 24-JUL-2002
DEFINITION  HIV-1 isolate patient AD-2 from USA pol protein (pol) gene, partial
	    cds
ACCESSION   AF459102
VERSION     AF459102.1 GI:21952004
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 965)
            Show all sequences for reference 1
  AUTHORS   Simon,V., Vanderhoeven,J., Hurley,A., Ramratnam,B., Louie,M.,
	    Dawson,K., Parkin,N., Boden,D. and Markowitz,M.
  TITLE     Evolving patterns of HIV-1 resistance to antiretroviral agents in
	    newly infected individuals
  JOURNAL   AIDS 16 (11), 1511-1519 (2002)
  PUBMED    12131189
REFERENCE   2 (bases 1 to 965)
            Show all sequences for reference 2
  AUTHORS   Simon,V., Vanderhoeven,J., Hurley,A., Ramratnam,B., Louie,M.,
	    Dawson,K., Parkin,N., Boden,D. and Markowitz,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-DEC-2001) Aaron Diamond AIDS Research Center, The
	    Rockefeller University, 455 First Avenue, New York City, NY 10016,
	    USA
COMMENT     Clinical history consistent with acute retroviral syndrome within
	    90 days of presentation. Negative HIV-1 serology documented within
	    120 days of screening.
FEATURES             Location/Qualifiers
     source	     1..965
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="patient AD-2"
		     /db_xref="taxon:11676"
		     /country="USA"
     gene	     <1..>965
		     /gene="pol"
     CDS	     <1..>965
		     /gene="pol"
		     /note="contains protease and reverse transcriptase;
		     sequence generated using in-house assay"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AAM82425.1"
		     /db_xref="GI:21952005"
		     /translation="PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKP
		     KMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEREGKISKIGPENPYNTPVF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDKDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPD
		     IVIYQYMDDLYVGSDLEIGQHRTKIEELREHLLKWGFTTPDKKHQ"
BASE COUNT	384 a	 154 c	  198 g    229 t
ORIGIN
       1 cctcagatca ctctttggca acgacccctc gtcacaataa agataggggg gcaactaaag 
      61 gaagctctat tagatacagg agcagatgat acagtattag aagaaatgag tttgccagga 
     121 agatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtatgat 
     181 cagatactca tagaaatctg tggacataaa gctataggta cagtattagt aggacctaca 
     241 cctgtcaaca taattggaag aaatctgttg actcagattg gttgcacttt aaattttcct 
     301 attagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaagtt 
     361 aaacaatggc cattgacaga agaaaagata aaagcattag tagaaatttg tacagaaatg 
     421 gaaagggaag ggaaaatttc aaaaattggg cctgaaaatc catataatac tccagtattt 
     481 gccataaaga aaaaagacag tactaaatgg agaaaattag tagatttcag agaacttaat 
     541 aaaagaactc aagatttctg ggaagttcaa ttaggaatac cacaccccgc agggttaaaa 
     601 aagaaaaaat cagtaacagt actggatgta ggtgatgcat acttttcagt tcccttagat 
     661 aaagacttca gaaagtatac tgcatttacc atacctagta caaacaatga gacaccaggg 
     721 attagatatc agtacaatgt gcttccccag ggatggaaag gatcaccagc aatattccaa 
     781 agtagcatga caaaaatctt agagcctttt agaaaacaaa atccagacat agttatctat 
     841 caatacatgg atgatttgta tgtaggatct gacttagaaa tagggcagca tagaacaaaa 
     901 atagaggaac tgagagaaca tctgttgaag tggggattta ccacaccaga caaaaaacat 
     961 cagaa
//
last modified: Tue May 31 10:56 2022


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