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LOCUS AF459102 965 bp RNA linear VRL 24-JUL-2002
DEFINITION HIV-1 isolate patient AD-2 from USA pol protein (pol) gene, partial
cds
ACCESSION AF459102
VERSION AF459102.1 GI:21952004
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 965)
Show all sequences for reference 1
AUTHORS Simon,V., Vanderhoeven,J., Hurley,A., Ramratnam,B., Louie,M.,
Dawson,K., Parkin,N., Boden,D. and Markowitz,M.
TITLE Evolving patterns of HIV-1 resistance to antiretroviral agents in
newly infected individuals
JOURNAL AIDS 16 (11), 1511-1519 (2002)
PUBMED 12131189
REFERENCE 2 (bases 1 to 965)
Show all sequences for reference 2
AUTHORS Simon,V., Vanderhoeven,J., Hurley,A., Ramratnam,B., Louie,M.,
Dawson,K., Parkin,N., Boden,D. and Markowitz,M.
TITLE Direct Submission
JOURNAL Submitted (17-DEC-2001) Aaron Diamond AIDS Research Center, The
Rockefeller University, 455 First Avenue, New York City, NY 10016,
USA
COMMENT Clinical history consistent with acute retroviral syndrome within
90 days of presentation. Negative HIV-1 serology documented within
120 days of screening.
FEATURES Location/Qualifiers
source 1..965
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="patient AD-2"
/db_xref="taxon:11676"
/country="USA"
gene <1..>965
/gene="pol"
CDS <1..>965
/gene="pol"
/note="contains protease and reverse transcriptase;
sequence generated using in-house assay"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AAM82425.1"
/db_xref="GI:21952005"
/translation="PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKP
KMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEREGKISKIGPENPYNTPVF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDKDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPD
IVIYQYMDDLYVGSDLEIGQHRTKIEELREHLLKWGFTTPDKKHQ"
BASE COUNT 384 a 154 c 198 g 229 t
ORIGIN
1 cctcagatca ctctttggca acgacccctc gtcacaataa agataggggg gcaactaaag
61 gaagctctat tagatacagg agcagatgat acagtattag aagaaatgag tttgccagga
121 agatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtatgat
181 cagatactca tagaaatctg tggacataaa gctataggta cagtattagt aggacctaca
241 cctgtcaaca taattggaag aaatctgttg actcagattg gttgcacttt aaattttcct
301 attagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaagtt
361 aaacaatggc cattgacaga agaaaagata aaagcattag tagaaatttg tacagaaatg
421 gaaagggaag ggaaaatttc aaaaattggg cctgaaaatc catataatac tccagtattt
481 gccataaaga aaaaagacag tactaaatgg agaaaattag tagatttcag agaacttaat
541 aaaagaactc aagatttctg ggaagttcaa ttaggaatac cacaccccgc agggttaaaa
601 aagaaaaaat cagtaacagt actggatgta ggtgatgcat acttttcagt tcccttagat
661 aaagacttca gaaagtatac tgcatttacc atacctagta caaacaatga gacaccaggg
721 attagatatc agtacaatgt gcttccccag ggatggaaag gatcaccagc aatattccaa
781 agtagcatga caaaaatctt agagcctttt agaaaacaaa atccagacat agttatctat
841 caatacatgg atgatttgta tgtaggatct gacttagaaa tagggcagca tagaacaaaa
901 atagaggaac tgagagaaca tctgttgaag tggggattta ccacaccaga caaaaaacat
961 cagaa
//
last modified: Tue May 31 10:56 2022