HIV Databases HIV Databases home HIV Databases home
HIV Sequence Database



Download: ENTIRE SEQUENCE SEQUENCE FRAGMENT start end
Format:  
View NCBI entry		Download GenBank file		Graphics View		Download GFF3 File

LOCUS	    AF405774		    1050 bp    DNA     linear	VRL 07-SEP-2006
DEFINITION  HIV-1 clone 1R2-25 from USA envelope glycoprotein (env) gene,
	    partial cds
ACCESSION   AF405774
VERSION     AF405774.1 GI:18650887
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1050)
            Show all sequences for reference 1
  AUTHORS   Zhu,T., Muthui,D., Holte,S., Nickle,D., Feng,F., Brodie,S.,
	    Hwangbo,Y., Mullins,J.I. and Corey,L.
  TITLE     Evidence for human immunodeficiency virus type 1 replication in
	    vivo in CD14(+) monocytes and its potential role as a source of
	    virus in patients on highly active antiretroviral therapy
  JOURNAL   J. Virol. 76 (2), 707-716 (2002)
  PUBMED    11752161
REFERENCE   2 (bases 1 to 1050)
            Show all sequences for reference 2
  AUTHORS   Zhu,T., Muthui,D., Holte,S., Nickle,D., Feng,F., Brodie,S.,
	    Hwangbo,Y., Mullins,J.I. and Corey,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-AUG-2001) Laboratory Medicine, University of
	    Washington, 960 Republican St. Room 362, Seattle, WA 98195-8070,
	    USA
COMMENT     Days since seroconversion calculated as (days since onset of
	    symptoms) - (days between symptom onset and seroconversion).
FEATURES             Location/Qualifiers
     source	     1..1050
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /db_xref="taxon:11676"
		     /clone="1R2-25"
		     /country="USA: Seattle"
     gene	     <1..>1050
		     /gene="env"
     CDS	     <1..>1050
		     /gene="env"
		     /note="gp120"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="AAL76462.1"
		     /db_xref="GI:18650888"
		     /translation="APAGFAILKCFNKTFNGTGPCINVSTVQCTHGIRPVVSTQLLLN
		     GSLAEEEVVIRSENLTDNTKIIIVQLNKSVVINCTRPNNNTRKSIHIGPGRAFYATGE
		     VIGDMRQAHCNISRKDWYEALQQIAIKLREQFENRTIAFNRSSGGDPEIVTHSFNCAG
		     EFFYCNTTQLFNNTWNGTGRSDNSENTTGNGTITLPCRMRQIVNMWQEVGKAMYAPPI
		     RGLIRCSSNITGLLLTRDGGNNTTTNGTQTEIFRPGGGDMRDNWRSELYKYKVVKIEP
		     LGVAPTRAKRRVVQREKRAALGALFLGFLGAAGSTMGAASMTLTVQARLLLSGIVQQQ
		     NNLLRAIEAQQHLLQL"
BASE COUNT	387 a	 178 c	  243 g    242 t
ORIGIN
       1 gccccggctg gttttgcgat tctaaaatgt tttaataaga cattcaatgg aacaggacca 
      61 tgtataaatg tcagcacagt acaatgtaca catggaatta gaccagtagt atcaactcaa 
     121 ctgctgttaa atggcagtct ggcagaagaa gaggtagtaa ttagatctga aaatctcaca 
     181 gacaatacta aaatcataat agtacagctg aacaaatctg tagtaattaa ttgtacaaga 
     241 cccaacaaca atacaagaaa aagtatacat ataggaccag ggagagcatt ttatgcaaca 
     301 ggagaagtaa taggagatat gagacaagca cattgtaaca ttagtagaaa agactggtat 
     361 gaagctttac aacagatagc tatcaaatta agagagcaat ttgagaatag aacaatagcc 
     421 tttaatcgat cctcgggagg agatcccgaa attgtaacac acagttttaa ttgtgcaggg 
     481 gaatttttct actgtaatac aacacaactg tttaataata cttggaatgg tactggacgg 
     541 tcagataact cagagaacac tacaggaaac ggaactatca cactcccatg cagaatgaga 
     601 caaattgtta acatgtggca ggaagtagga aaagcaatgt atgcccctcc catcagagga 
     661 ctaattagat gttcatcaaa tattacaggg ctgctattaa caagagatgg aggtaataat 
     721 accaccacga acgggactca gactgagata ttcagacctg gaggaggaga tatgagggac 
     781 aattggagaa gtgaattata taaatataaa gtagtaaaaa ttgaaccatt aggagtagca 
     841 cccactaggg caaagagaag agtggtgcag agagaaaaaa gagcagcact aggagcgttg 
     901 ttccttgggt tcttgggagc agcaggaagc actatgggcg cagcgtcaat gacgctgacg 
     961 gtacaggcca gactattatt gtctggtata gtgcaacagc agaataattt gctgagggct 
    1021 attgaggcgc aacagcatct gttgcaactc 
//
last modified: Tue May 31 10:56 2022


Questions or comments? Contact us at seq-info@lanl.gov.

 
Operated by Triad National Security, LLC for the U.S. Department of Energy's National Nuclear Security Administration
© Copyright Triad National Security, LLC. All Rights Reserved | Disclaimer/Privacy

Dept of Health & Human Services Los Alamos National Institutes of Health