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LOCUS	    AF388149		    1302 bp    RNA     linear	VRL 16-NOV-2005
DEFINITION  HIV-1 isolate 549 from Uganda pol protein (pol) gene, partial cds
ACCESSION   AF388149
VERSION     AF388149.2 GI:38112680
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1302)
            Show all sequences for reference 1
  AUTHORS   Eshleman,S.H., Becker-Pergola,G., Deseyve,M., Guay,L.A., Mracna,M.,
	    Fleming,T., Cunningham,S., Musoke,P., Mmiro,F. and Jackson,J.B.
  TITLE     Impact of human immunodeficiency virus type 1 (hiv-1) subtype on
	    women receiving single-dose nevirapine prophylaxis to prevent hiv-1
	    vertical transmission (hiv network for prevention trials 012 study)
  JOURNAL   J. Infect. Dis. 184 (7), 914-917 (2001)
  PUBMED    11509999
REFERENCE   2 (bases 1 to 1302)
            Show all sequences for reference 2
  AUTHORS   Becker-Pergola,G., Deseyve,M., Mracna,M., Guay,L.A., Cunningham,S.,
	    Musoke,P., Mmiro,F., Jackson,J.B. and Eshleman,S.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2001) Department of Pathology, Johns Hopkins
	    University, 720 Rutland Ave., Baltimore, MD 21205, USA
REFERENCE   3 (bases 1 to 1302)
            Show all sequences for reference 3
  AUTHORS   Becker-Pergola,G., Deseyve,M., Mracna,M., Guay,L.A., Cunningham,S.,
	    Musoke,P., Mmiro,F., Jackson,J.B. and Eshleman,S.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (31-OCT-2003) Department of Pathology, Johns Hopkins
	    University, 720 Rutland Ave., Baltimore, MD 21205, USA
COMMENT     On Oct 31, 2003 this sequence version replaced gi:19071075 in
	    GenBank. HIV-db sequence updated Jan 2006.
FEATURES             Location/Qualifiers
     source	     1..1302
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="549"
		     /db_xref="taxon:11676"
		     /country="Uganda"
		     /note="recombinant subtype from patient #549, 6-8 weeks
		     post-partum mother"
     gene	     <1..>1302
		     /gene="pol"
     CDS	     <1..>1302
		     /gene="pol"
		     /note="protease and 5'' reverse transcriptase region"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AAL84091.2"
		     /db_xref="GI:38112681"
		     /translation="PQITLWQRPVVAVKIGGQLKEALLDTGADDTVLEEINLPGKWKP
		     KMIGGIGGFIKVRQYEQIPVEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICTEMEKEGKISKIGPENPYNTPIF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LYEEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPE
		     IVIYQYMDDLYVGSDLEIGQHRIKIEELREHLLRWGFTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPIQLPEKESWTVNDIQKLVGKLNWASQIYAGIKVRQLCRLLRGAKALTDVV
		     ALTEEAELELAENREILKDPVHGVYYDPSKDLIAEIQKQGQG"
BASE COUNT	518 a	 208 c	  277 g    298 t      1 other
ORIGIN
       1 cctcaaatca ctctttggca acgacccgtc gtcgcagtaa agataggggg acagctaaaa 
      61 gaagctctat tagatacagg agcagatgat acagtattag aagaaataaa tttgccagga 
     121 aaatggaagc caaaaatgat agggggaatt ggaggcttta tcaaagtaag acaatatgag 
     181 caaataccag tagaaatctg tggacataaa gctataggta cagtattagt gggacctaca 
     241 cctgttaaca taattggaag aaatttgttg actcagattg gttgcacttt aaattttcca 
     301 attagtccca ttgaaactgt accagtaaaa ytaaaaccag ggatggatgg cccaaaagtt 
     361 aaacaatggc cattgacaga agaaaaaatc aaagccctaa cagaaatttg tacagaaatg 
     421 gagaaggaag gaaaaatttc aaaaattggg cctgaaaatc catacaatac tccaatattt 
     481 gccataaaga aaaaagacag tactaaatgg agaaaattag tagatttcag agaacttaat 
     541 aaaagaactc aagacttctg ggaagttcaa ctaggaatac cacatcctgc agggctaaaa 
     601 aagaaaaaat cagtaacagt actggatgtg ggtgatgcat atttttcagt tcccttatat 
     661 gaagaattta gaaaatatac agcattcacc atacctagta taaacaatga gacaccagga 
     721 attagatatc agtacaatgt gcttccacag ggatggaaag gatcaccggc aatattccaa 
     781 agtagcatga caaaaatctt agaacctttt agaaaacaaa atccggaaat agttatctat 
     841 cagtacatgg atgatttgta tgtaggatct gatttagaaa tagggcagca tagaataaaa 
     901 atagaggagt taagggaaca cctattgagg tggggattta ccacaccaga caaaaagcat 
     961 cagaaagaac ctccatttct ttggatgggt tatgaactcc atcctgataa atggacagtg 
    1021 cagcctatac aattgccaga aaaagaaagc tggactgtca atgatataca gaaattagtg 
    1081 ggaaaactga attgggcaag tcaaatttat gcagggatta aagtaaggca attgtgtaga 
    1141 ctcctcagag gagccaaagc actaacagat gtagtagcac tgactgaaga agcagaatta 
    1201 gaattggcag agaacaggga gattctaaaa gaccctgtgc atggagtata ttatgaccca 
    1261 tcaaaagact taatagcaga aatacagaaa caagggcaag gc
//
last modified: Tue May 31 10:56 2022


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