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LOCUS AF388149 1302 bp RNA linear VRL 16-NOV-2005
DEFINITION HIV-1 isolate 549 from Uganda pol protein (pol) gene, partial cds
ACCESSION AF388149
VERSION AF388149.2 GI:38112680
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1302)
Show all sequences for reference 1
AUTHORS Eshleman,S.H., Becker-Pergola,G., Deseyve,M., Guay,L.A., Mracna,M.,
Fleming,T., Cunningham,S., Musoke,P., Mmiro,F. and Jackson,J.B.
TITLE Impact of human immunodeficiency virus type 1 (hiv-1) subtype on
women receiving single-dose nevirapine prophylaxis to prevent hiv-1
vertical transmission (hiv network for prevention trials 012 study)
JOURNAL J. Infect. Dis. 184 (7), 914-917 (2001)
PUBMED 11509999
REFERENCE 2 (bases 1 to 1302)
Show all sequences for reference 2
AUTHORS Becker-Pergola,G., Deseyve,M., Mracna,M., Guay,L.A., Cunningham,S.,
Musoke,P., Mmiro,F., Jackson,J.B. and Eshleman,S.H.
TITLE Direct Submission
JOURNAL Submitted (05-JUN-2001) Department of Pathology, Johns Hopkins
University, 720 Rutland Ave., Baltimore, MD 21205, USA
REFERENCE 3 (bases 1 to 1302)
Show all sequences for reference 3
AUTHORS Becker-Pergola,G., Deseyve,M., Mracna,M., Guay,L.A., Cunningham,S.,
Musoke,P., Mmiro,F., Jackson,J.B. and Eshleman,S.H.
TITLE Direct Submission
JOURNAL Submitted (31-OCT-2003) Department of Pathology, Johns Hopkins
University, 720 Rutland Ave., Baltimore, MD 21205, USA
COMMENT On Oct 31, 2003 this sequence version replaced gi:19071075 in
GenBank. HIV-db sequence updated Jan 2006.
FEATURES Location/Qualifiers
source 1..1302
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="549"
/db_xref="taxon:11676"
/country="Uganda"
/note="recombinant subtype from patient #549, 6-8 weeks
post-partum mother"
gene <1..>1302
/gene="pol"
CDS <1..>1302
/gene="pol"
/note="protease and 5'' reverse transcriptase region"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AAL84091.2"
/db_xref="GI:38112681"
/translation="PQITLWQRPVVAVKIGGQLKEALLDTGADDTVLEEINLPGKWKP
KMIGGIGGFIKVRQYEQIPVEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICTEMEKEGKISKIGPENPYNTPIF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LYEEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPE
IVIYQYMDDLYVGSDLEIGQHRIKIEELREHLLRWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVQPIQLPEKESWTVNDIQKLVGKLNWASQIYAGIKVRQLCRLLRGAKALTDVV
ALTEEAELELAENREILKDPVHGVYYDPSKDLIAEIQKQGQG"
BASE COUNT 518 a 208 c 277 g 298 t 1 other
ORIGIN
1 cctcaaatca ctctttggca acgacccgtc gtcgcagtaa agataggggg acagctaaaa
61 gaagctctat tagatacagg agcagatgat acagtattag aagaaataaa tttgccagga
121 aaatggaagc caaaaatgat agggggaatt ggaggcttta tcaaagtaag acaatatgag
181 caaataccag tagaaatctg tggacataaa gctataggta cagtattagt gggacctaca
241 cctgttaaca taattggaag aaatttgttg actcagattg gttgcacttt aaattttcca
301 attagtccca ttgaaactgt accagtaaaa ytaaaaccag ggatggatgg cccaaaagtt
361 aaacaatggc cattgacaga agaaaaaatc aaagccctaa cagaaatttg tacagaaatg
421 gagaaggaag gaaaaatttc aaaaattggg cctgaaaatc catacaatac tccaatattt
481 gccataaaga aaaaagacag tactaaatgg agaaaattag tagatttcag agaacttaat
541 aaaagaactc aagacttctg ggaagttcaa ctaggaatac cacatcctgc agggctaaaa
601 aagaaaaaat cagtaacagt actggatgtg ggtgatgcat atttttcagt tcccttatat
661 gaagaattta gaaaatatac agcattcacc atacctagta taaacaatga gacaccagga
721 attagatatc agtacaatgt gcttccacag ggatggaaag gatcaccggc aatattccaa
781 agtagcatga caaaaatctt agaacctttt agaaaacaaa atccggaaat agttatctat
841 cagtacatgg atgatttgta tgtaggatct gatttagaaa tagggcagca tagaataaaa
901 atagaggagt taagggaaca cctattgagg tggggattta ccacaccaga caaaaagcat
961 cagaaagaac ctccatttct ttggatgggt tatgaactcc atcctgataa atggacagtg
1021 cagcctatac aattgccaga aaaagaaagc tggactgtca atgatataca gaaattagtg
1081 ggaaaactga attgggcaag tcaaatttat gcagggatta aagtaaggca attgtgtaga
1141 ctcctcagag gagccaaagc actaacagat gtagtagcac tgactgaaga agcagaatta
1201 gaattggcag agaacaggga gattctaaaa gaccctgtgc atggagtata ttatgaccca
1261 tcaaaagact taatagcaga aatacagaaa caagggcaag gc
//
last modified: Tue May 31 10:56 2022