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LOCUS AF388104 1260 bp RNA linear VRL 16-NOV-2005
DEFINITION HIV-1 isolate 623 from Uganda pol protein (pol) gene, partial cds
ACCESSION AF388104
VERSION AF388104.1 GI:19070985
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1260)
Show all sequences for reference 1
AUTHORS Eshleman,S.H., Becker-Pergola,G., Deseyve,M., Guay,L.A., Mracna,M.,
Fleming,T., Cunningham,S., Musoke,P., Mmiro,F. and Jackson,J.B.
TITLE Impact of human immunodeficiency virus type 1 (hiv-1) subtype on
women receiving single-dose nevirapine prophylaxis to prevent hiv-1
vertical transmission (hiv network for prevention trials 012 study)
JOURNAL J. Infect. Dis. 184 (7), 914-917 (2001)
PUBMED 11509999
REFERENCE 2 (bases 1 to 1260)
Show all sequences for reference 2
AUTHORS Eshleman,S.H., Guay,L.A., Wang,J., Mwatha,A., Brown,E.R.,
Musoke,P., Mmiro,F. and Jackson,J.B.
TITLE Distinct patterns of emergence and fading of K103N and Y181C in
women with subtype A vs. D after single-dose nevirapine: HIVNET 012
JOURNAL J. Acquir. Immune Defic. Syndr. 40 (1), 24-29 (2005)
PUBMED 16123677
REFERENCE 3 (bases 1 to 1260)
Show all sequences for reference 3
AUTHORS Becker-Pergola,G., Deseyve,M., Mracna,M., Guay,L.A., Cunningham,S.,
Musoke,P., Mmiro,F., Jackson,J.B. and Eshleman,S.H.
TITLE Direct Submission
JOURNAL Submitted (05-JUN-2001) Department of Pathology, Johns Hopkins
University, 720 Rutland Ave., Baltimore, MD 21205, USA
FEATURES Location/Qualifiers
source 1..1260
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="623"
/db_xref="taxon:11676"
/country="Uganda"
/note="from patient #623, 6-8 weeks post-partum mother
subtype: A"
gene <1..>1260
/gene="pol"
CDS <1..>1260
/gene="pol"
/note="protease and 5'' reverse transcriptase region"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AAL84046.1"
/db_xref="GI:19070986"
/translation="PQITLWQRPLVTVRIGGQLKEALLDTGADDTVLEXINLPGKWKP
RMIGGIGGFIKVKQYDQILIEICGKKAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPIS
HIETVPVTLKPGXDGPRIKQWPLTEEKIKALTEICREMEKEGKISRIGPENPYNTPVF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDKSFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMIKILEPFRSQNPE
IIIYQYMDDLYVGSDLEIGQHRTKVEELRAHLLSWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVQPIQLPDKDSWTVNDIQKLVGKLNWASQIYSGIKVKQLCKLIRGAKALTDII
TLTEEAELELAENREILKNPVHGVYYDP"
BASE COUNT 498 a 194 c 262 g 302 t 4 other
ORIGIN
1 cctcaaatca ctctttggca acgacccctc gtcacagtaa gaataggagg acagctaaaa
61 gaagctctat tagatacagg agcagatgat acagtattag aagawataaa tttgccagga
121 aaatggaaac caagaatgat aggaggaatt ggaggtttta tcaaagtcaa acagtatgat
181 cagatactta tagaaatttg tggaaaaaag gctataggta cagtattagt aggacctaca
241 cctgtcaaca taattggaag gaatatgttg actcaaattg gttgtacttt aaattttcca
301 attagtcata ttgagactgt accagtaaca ttaaagccag gaayggatgg cccaaggatt
361 aaacaatggc cattgacaga agaaaaaata aaagcattaa cagaaatttg tagagaaatg
421 gaaaaagaag gaaagatttc aagaattggg cctgaaaatc catataatac tccagtattt
481 gctataaaga aaaaagatag tacyaaatgg agaaaattag tagattttag agagcttaat
541 aaaagaactc aggatttctg ggaagttcaa ttaggaatac cgcatcccgc aggtttaaaa
601 aagaaaaaat cagtaacagt actagatgta ggggacgcat acttttcagt tcctttagat
661 aaaagcttta gaaagtatac tgcatttacc atacctagta taaataatga gacaccagga
721 atcaggtatc agtacaatgt gcttccacag ggatggaaag gatcaccagc aatattccag
781 agtagcatga taaaaatctt agagcccttt agatcacaaa atccagaaat aattatctat
841 caatacatgg atgacttgta tgtaggatct gacttagaaa tagggcagca tagaacaaaa
901 gtagaggagt tgagagctca tctattgagt tggggattta ctacaccaga caaaaagcat
961 cagaaagaac ctccatttct ttggatggga tatgaactcc atcctgacaa atggacagtg
1021 cagcctatac agctgccaga caaagayagc tggactgtca atgatataca gaaattagtg
1081 ggaaaactaa attgggcaag tcaaatttat tcagggatta aagtaaagca actgtgtaaa
1141 ctcataagag gagccaaagc actaacagat ataataacac tgactgagga agcagaatta
1201 gaattggcag agaacaggga gattctaaaa aaccctgtgc atggagtata ttatgaccca
//
last modified: Tue May 31 10:56 2022