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LOCUS	    AF388104		    1260 bp    RNA     linear	VRL 16-NOV-2005
DEFINITION  HIV-1 isolate 623 from Uganda pol protein (pol) gene, partial cds
ACCESSION   AF388104
VERSION     AF388104.1 GI:19070985
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1260)
            Show all sequences for reference 1
  AUTHORS   Eshleman,S.H., Becker-Pergola,G., Deseyve,M., Guay,L.A., Mracna,M.,
	    Fleming,T., Cunningham,S., Musoke,P., Mmiro,F. and Jackson,J.B.
  TITLE     Impact of human immunodeficiency virus type 1 (hiv-1) subtype on
	    women receiving single-dose nevirapine prophylaxis to prevent hiv-1
	    vertical transmission (hiv network for prevention trials 012 study)
  JOURNAL   J. Infect. Dis. 184 (7), 914-917 (2001)
  PUBMED    11509999
REFERENCE   2 (bases 1 to 1260)
            Show all sequences for reference 2
  AUTHORS   Eshleman,S.H., Guay,L.A., Wang,J., Mwatha,A., Brown,E.R.,
	    Musoke,P., Mmiro,F. and Jackson,J.B.
  TITLE     Distinct patterns of emergence and fading of K103N and Y181C in
	    women with subtype A vs. D after single-dose nevirapine: HIVNET 012
  JOURNAL   J. Acquir. Immune Defic. Syndr. 40 (1), 24-29 (2005)
  PUBMED    16123677
REFERENCE   3 (bases 1 to 1260)
            Show all sequences for reference 3
  AUTHORS   Becker-Pergola,G., Deseyve,M., Mracna,M., Guay,L.A., Cunningham,S.,
	    Musoke,P., Mmiro,F., Jackson,J.B. and Eshleman,S.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2001) Department of Pathology, Johns Hopkins
	    University, 720 Rutland Ave., Baltimore, MD 21205, USA
FEATURES             Location/Qualifiers
     source	     1..1260
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="623"
		     /db_xref="taxon:11676"
		     /country="Uganda"
		     /note="from patient #623, 6-8 weeks post-partum mother
		     subtype: A"
     gene	     <1..>1260
		     /gene="pol"
     CDS	     <1..>1260
		     /gene="pol"
		     /note="protease and 5'' reverse transcriptase region"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AAL84046.1"
		     /db_xref="GI:19070986"
		     /translation="PQITLWQRPLVTVRIGGQLKEALLDTGADDTVLEXINLPGKWKP
		     RMIGGIGGFIKVKQYDQILIEICGKKAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPIS
		     HIETVPVTLKPGXDGPRIKQWPLTEEKIKALTEICREMEKEGKISRIGPENPYNTPVF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDKSFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMIKILEPFRSQNPE
		     IIIYQYMDDLYVGSDLEIGQHRTKVEELRAHLLSWGFTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPIQLPDKDSWTVNDIQKLVGKLNWASQIYSGIKVKQLCKLIRGAKALTDII
		     TLTEEAELELAENREILKNPVHGVYYDP"
BASE COUNT	498 a	 194 c	  262 g    302 t      4 other
ORIGIN
       1 cctcaaatca ctctttggca acgacccctc gtcacagtaa gaataggagg acagctaaaa 
      61 gaagctctat tagatacagg agcagatgat acagtattag aagawataaa tttgccagga 
     121 aaatggaaac caagaatgat aggaggaatt ggaggtttta tcaaagtcaa acagtatgat 
     181 cagatactta tagaaatttg tggaaaaaag gctataggta cagtattagt aggacctaca 
     241 cctgtcaaca taattggaag gaatatgttg actcaaattg gttgtacttt aaattttcca 
     301 attagtcata ttgagactgt accagtaaca ttaaagccag gaayggatgg cccaaggatt 
     361 aaacaatggc cattgacaga agaaaaaata aaagcattaa cagaaatttg tagagaaatg 
     421 gaaaaagaag gaaagatttc aagaattggg cctgaaaatc catataatac tccagtattt 
     481 gctataaaga aaaaagatag tacyaaatgg agaaaattag tagattttag agagcttaat 
     541 aaaagaactc aggatttctg ggaagttcaa ttaggaatac cgcatcccgc aggtttaaaa 
     601 aagaaaaaat cagtaacagt actagatgta ggggacgcat acttttcagt tcctttagat 
     661 aaaagcttta gaaagtatac tgcatttacc atacctagta taaataatga gacaccagga 
     721 atcaggtatc agtacaatgt gcttccacag ggatggaaag gatcaccagc aatattccag 
     781 agtagcatga taaaaatctt agagcccttt agatcacaaa atccagaaat aattatctat 
     841 caatacatgg atgacttgta tgtaggatct gacttagaaa tagggcagca tagaacaaaa 
     901 gtagaggagt tgagagctca tctattgagt tggggattta ctacaccaga caaaaagcat 
     961 cagaaagaac ctccatttct ttggatggga tatgaactcc atcctgacaa atggacagtg 
    1021 cagcctatac agctgccaga caaagayagc tggactgtca atgatataca gaaattagtg 
    1081 ggaaaactaa attgggcaag tcaaatttat tcagggatta aagtaaagca actgtgtaaa 
    1141 ctcataagag gagccaaagc actaacagat ataataacac tgactgagga agcagaatta 
    1201 gaattggcag agaacaggga gattctaaaa aaccctgtgc atggagtata ttatgaccca 
//
last modified: Tue May 31 10:56 2022


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