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LOCUS	    AF388096		    1260 bp    RNA     linear	VRL 16-NOV-2005
DEFINITION  HIV-1 isolate 584 from Uganda pol protein (pol) gene, partial cds
ACCESSION   AF388096
VERSION     AF388096.1 GI:19070969
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1260)
            Show all sequences for reference 1
  AUTHORS   Eshleman,S.H., Becker-Pergola,G., Deseyve,M., Guay,L.A., Mracna,M.,
	    Fleming,T., Cunningham,S., Musoke,P., Mmiro,F. and Jackson,J.B.
  TITLE     Impact of human immunodeficiency virus type 1 (hiv-1) subtype on
	    women receiving single-dose nevirapine prophylaxis to prevent hiv-1
	    vertical transmission (hiv network for prevention trials 012 study)
  JOURNAL   J. Infect. Dis. 184 (7), 914-917 (2001)
  PUBMED    11509999
REFERENCE   2 (bases 1 to 1260)
            Show all sequences for reference 2
  AUTHORS   Eshleman,S.H., Guay,L.A., Wang,J., Mwatha,A., Brown,E.R.,
	    Musoke,P., Mmiro,F. and Jackson,J.B.
  TITLE     Distinct patterns of emergence and fading of K103N and Y181C in
	    women with subtype A vs. D after single-dose nevirapine: HIVNET 012
  JOURNAL   J. Acquir. Immune Defic. Syndr. 40 (1), 24-29 (2005)
  PUBMED    16123677
REFERENCE   3 (bases 1 to 1260)
            Show all sequences for reference 3
  AUTHORS   Becker-Pergola,G., Deseyve,M., Mracna,M., Guay,L.A., Cunningham,S.,
	    Musoke,P., Mmiro,F., Jackson,J.B. and Eshleman,S.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2001) Department of Pathology, Johns Hopkins
	    University, 720 Rutland Ave., Baltimore, MD 21205, USA
FEATURES             Location/Qualifiers
     source	     1..1260
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="584"
		     /db_xref="taxon:11676"
		     /country="Uganda"
		     /note="from patient #584, 6-8 weeks post-partum mother
		     subtype: A"
     gene	     <1..>1260
		     /gene="pol"
     CDS	     <1..>1260
		     /gene="pol"
		     /note="protease and 5'' reverse transcriptase region"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AAL84038.1"
		     /db_xref="GI:19070970"
		     /translation="PQITLWQRPLVTVKIGGQLREALLDTGADDTVLEDINLPGKWKP
		     KMIGGIGGFIKVKQYDQILIEICGKKAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICTDMEKEGKISKIGPENPYNTPIF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LYEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRSKNPE
		     MIIYQYMDDLYVGSDLEIGQHRAKIEELRAHLLSWGFTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPIVLPEKESWTVNDIQKLVGKLNWASQIYAGIKVKQLCRLLRGAKALTDXV
		     TLTEEAELELAENREILKDPVHGAYYDP"
BASE COUNT	490 a	 201 c	  270 g    294 t      5 other
ORIGIN
       1 cctcaaatca ctctttggca acgacccctt gtcacagtaa aaataggagg acagctaaga 
      61 gaggccctac tagatacagg agcagatgat acagtattag aagacataaa tttgccagga 
     121 aaatggaaac caaaaatgat agggggaatt ggaggtttca tcaaggtaaa acagtatgat 
     181 cagatactta tagaaatttg tggaaaaaag gctataggta cagtattagt aggacctaca 
     241 cctgtcaaca taattggaag aaatatgttg acccagattg gttgtacttt aaatttccca 
     301 attagtccta ttgagactgt accagtaaaa ttaaagccag gaatggatgg cccaaaggtt 
     361 aaacaatggc cattgacaga agaaaaaata aaagcattaa cagaaatttg tacagatatg 
     421 gaaaaggaag gaaaaatttc aaaaattggg cctgaaaatc catacaatac tccaatattt 
     481 gcgataaaga aaaaagacag cactaaatgg agaaaattag tagatttcag agagctyaat 
     541 aaaagaacwc aagacttttg ggaagtacaa ttaggaatac cgcatccagc gggcytaaaa 
     601 aagaaaaaat cagtaacagt actggatgtg ggggatgcat atttttcagt tcctttatat 
     661 gaagacttta gaaaatatac tgcattcacc atacctagta taaacaatga gacaccagga 
     721 attaggtatc aatacaatgt gcttccacag ggatggaaag gatcaccggc aatattccaa 
     781 agtagcatga caaaaatttt agagcccttt agatcaaaga atccagagat gattatctat 
     841 caatatatgg atgatttgta tgtaggatct gatttagaaa tagggcagca tagagcaaaa 
     901 atagaagaac taagagctca tttattgagc tggggattta ctacaccaga caaaaagcat 
     961 cagaaagaac cyccattcct ttggatggga tatgagctcc atcctgacaa gtggacagtc 
    1021 cagcctatag tgctgccaga aaaggaaagc tggactgtta atgatataca gaaattagtg 
    1081 gggaaactaa actgggcaag tcagatttat gcagggatta aagtaaagca attgtgtaga 
    1141 ctcctcagag gagccaaagc actaacagat rtagtaacat tgactgagga agcagaatta 
    1201 gaattagcag agaacaggga gattctaaaa gaccctgtgc atggagcata ttatgacccc 
//
last modified: Tue May 31 10:56 2022


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