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LOCUS AF388096 1260 bp RNA linear VRL 16-NOV-2005
DEFINITION HIV-1 isolate 584 from Uganda pol protein (pol) gene, partial cds
ACCESSION AF388096
VERSION AF388096.1 GI:19070969
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1260)
Show all sequences for reference 1
AUTHORS Eshleman,S.H., Becker-Pergola,G., Deseyve,M., Guay,L.A., Mracna,M.,
Fleming,T., Cunningham,S., Musoke,P., Mmiro,F. and Jackson,J.B.
TITLE Impact of human immunodeficiency virus type 1 (hiv-1) subtype on
women receiving single-dose nevirapine prophylaxis to prevent hiv-1
vertical transmission (hiv network for prevention trials 012 study)
JOURNAL J. Infect. Dis. 184 (7), 914-917 (2001)
PUBMED 11509999
REFERENCE 2 (bases 1 to 1260)
Show all sequences for reference 2
AUTHORS Eshleman,S.H., Guay,L.A., Wang,J., Mwatha,A., Brown,E.R.,
Musoke,P., Mmiro,F. and Jackson,J.B.
TITLE Distinct patterns of emergence and fading of K103N and Y181C in
women with subtype A vs. D after single-dose nevirapine: HIVNET 012
JOURNAL J. Acquir. Immune Defic. Syndr. 40 (1), 24-29 (2005)
PUBMED 16123677
REFERENCE 3 (bases 1 to 1260)
Show all sequences for reference 3
AUTHORS Becker-Pergola,G., Deseyve,M., Mracna,M., Guay,L.A., Cunningham,S.,
Musoke,P., Mmiro,F., Jackson,J.B. and Eshleman,S.H.
TITLE Direct Submission
JOURNAL Submitted (05-JUN-2001) Department of Pathology, Johns Hopkins
University, 720 Rutland Ave., Baltimore, MD 21205, USA
FEATURES Location/Qualifiers
source 1..1260
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="584"
/db_xref="taxon:11676"
/country="Uganda"
/note="from patient #584, 6-8 weeks post-partum mother
subtype: A"
gene <1..>1260
/gene="pol"
CDS <1..>1260
/gene="pol"
/note="protease and 5'' reverse transcriptase region"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AAL84038.1"
/db_xref="GI:19070970"
/translation="PQITLWQRPLVTVKIGGQLREALLDTGADDTVLEDINLPGKWKP
KMIGGIGGFIKVKQYDQILIEICGKKAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICTDMEKEGKISKIGPENPYNTPIF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LYEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRSKNPE
MIIYQYMDDLYVGSDLEIGQHRAKIEELRAHLLSWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVQPIVLPEKESWTVNDIQKLVGKLNWASQIYAGIKVKQLCRLLRGAKALTDXV
TLTEEAELELAENREILKDPVHGAYYDP"
BASE COUNT 490 a 201 c 270 g 294 t 5 other
ORIGIN
1 cctcaaatca ctctttggca acgacccctt gtcacagtaa aaataggagg acagctaaga
61 gaggccctac tagatacagg agcagatgat acagtattag aagacataaa tttgccagga
121 aaatggaaac caaaaatgat agggggaatt ggaggtttca tcaaggtaaa acagtatgat
181 cagatactta tagaaatttg tggaaaaaag gctataggta cagtattagt aggacctaca
241 cctgtcaaca taattggaag aaatatgttg acccagattg gttgtacttt aaatttccca
301 attagtccta ttgagactgt accagtaaaa ttaaagccag gaatggatgg cccaaaggtt
361 aaacaatggc cattgacaga agaaaaaata aaagcattaa cagaaatttg tacagatatg
421 gaaaaggaag gaaaaatttc aaaaattggg cctgaaaatc catacaatac tccaatattt
481 gcgataaaga aaaaagacag cactaaatgg agaaaattag tagatttcag agagctyaat
541 aaaagaacwc aagacttttg ggaagtacaa ttaggaatac cgcatccagc gggcytaaaa
601 aagaaaaaat cagtaacagt actggatgtg ggggatgcat atttttcagt tcctttatat
661 gaagacttta gaaaatatac tgcattcacc atacctagta taaacaatga gacaccagga
721 attaggtatc aatacaatgt gcttccacag ggatggaaag gatcaccggc aatattccaa
781 agtagcatga caaaaatttt agagcccttt agatcaaaga atccagagat gattatctat
841 caatatatgg atgatttgta tgtaggatct gatttagaaa tagggcagca tagagcaaaa
901 atagaagaac taagagctca tttattgagc tggggattta ctacaccaga caaaaagcat
961 cagaaagaac cyccattcct ttggatggga tatgagctcc atcctgacaa gtggacagtc
1021 cagcctatag tgctgccaga aaaggaaagc tggactgtta atgatataca gaaattagtg
1081 gggaaactaa actgggcaag tcagatttat gcagggatta aagtaaagca attgtgtaga
1141 ctcctcagag gagccaaagc actaacagat rtagtaacat tgactgagga agcagaatta
1201 gaattagcag agaacaggga gattctaaaa gaccctgtgc atggagcata ttatgacccc
//
last modified: Tue May 31 10:56 2022