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LOCUS	    AF388090		    1260 bp    RNA     linear	VRL 16-NOV-2005
DEFINITION  HIV-1 isolate 503 from Uganda pol protein (pol) gene, partial cds
ACCESSION   AF388090
VERSION     AF388090.1 GI:19070957
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1260)
            Show all sequences for reference 1
  AUTHORS   Eshleman,S.H., Becker-Pergola,G., Deseyve,M., Guay,L.A., Mracna,M.,
	    Fleming,T., Cunningham,S., Musoke,P., Mmiro,F. and Jackson,J.B.
  TITLE     Impact of human immunodeficiency virus type 1 (hiv-1) subtype on
	    women receiving single-dose nevirapine prophylaxis to prevent hiv-1
	    vertical transmission (hiv network for prevention trials 012 study)
  JOURNAL   J. Infect. Dis. 184 (7), 914-917 (2001)
  PUBMED    11509999
REFERENCE   2 (bases 1 to 1260)
            Show all sequences for reference 2
  AUTHORS   Becker-Pergola,G., Deseyve,M., Mracna,M., Guay,L.A., Cunningham,S.,
	    Musoke,P., Mmiro,F., Jackson,J.B. and Eshleman,S.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2001) Department of Pathology, Johns Hopkins
	    University, 720 Rutland Ave., Baltimore, MD 21205, USA
FEATURES             Location/Qualifiers
     source	     1..1260
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="503"
		     /db_xref="taxon:11676"
		     /country="Uganda"
		     /note="from patient #503, non-transmitter, 6-8 weeks
		     post-partum mother subtype: A"
     gene	     <1..>1260
		     /gene="pol"
     CDS	     <1..>1260
		     /gene="pol"
		     /note="protease and 5'' reverse transcriptase region"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AAL84032.1"
		     /db_xref="GI:19070958"
		     /translation="PQITLWQRPIVTVRIEGQLKEALLDTGADDTVLEDINLPGKWKP
		     KMIGGIGGFIKVKQYDQILIEICGKRAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPIS
		     PIETIPVKLKPGMDGPKVKQWPLTEEKIKALTEICTDMEKEGKISRIGPENPYNTPVF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDESFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMIKILEPFRSQNPE
		     IVIYQYMDDLYVGSDLEIGQHRAKIEELRAHLLSWGFTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPIQLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGTKALTXVV
		     TLTEEAELELAENREILKDPVHGVYYDP"
BASE COUNT	490 a	 205 c	  268 g    288 t      9 other
ORIGIN
       1 cctcaaatca ctctttggca acgacccatt gtcacagtaa gaatagaggg acagctaaaa 
      61 gaagctctat tagatacagg agcagatgat acagtactag aagatataaa tttgccagga 
     121 aaatggaaac caaaaatgat agggggaatt ggaggattta tcaaggtaaa acagtatgat 
     181 cagatactta tagaaatttg tggaaaaagg gctataggta cagtactagt aggacctacm 
     241 cctgtcaaca taattggmag aaacatgcta acccagattg gttgtacttt aaattttcca 
     301 attagtccta ttgagactat accagtaaaa ttaaaaccag gaatggatgg tccaaaggtt 
     361 aaacaatggc cattgacaga agaaaaaata aaagcattaa cagaaatttg tacagayatg 
     421 gaaaaagaag gaaaaatttc aagaattggg cctgaaaatc catacaatac tccagtattc 
     481 gctataaaga aaaaagacag cactaaatgg agraaattag tagatttcag agagctyaat 
     541 aaaagaactc aggacttctg ggaagttcag ttaggaatac cgcatccagc aggtctaaaa 
     601 aagaagaaat cagtaacagt actggatgtg ggggacgcat atttttcagt tcctttagat 
     661 gaaagcttta gaaagtatac tgcattcacc atacctagta caaacaatga gacaccagga 
     721 atcaggtatc agtacaatgt gcttccacag ggatggaaag gatcaccggc aatattccag 
     781 agtagcatga taaaaatctt agagcccttc agatcacaaa atccagaaat agttatctat 
     841 caatacatgg atgatttgta tgtaggatct gatttagaaa tagggcagca tagagcaaaa 
     901 atagaggagt tgagagctca tctattgagc tgggggttta ctacaccaga caaaaagcat 
     961 cagaaagaac ctccatttct gtggatggga tatgaactac atcctgacaa atggacagtc 
    1021 cagcctatac arytgccaga aaaagacagc tggactgtca atgatataca aaaattagtg 
    1081 ggaaaactaa attgggcaag tcagatttat gcagggatta aagtaaarca actgtgtaaa 
    1141 ctcctcaggg gaaccaaagc actaacagak gtagtaacac tgactgagga agcagaatta 
    1201 gaattagcag agaacaggga gattctaaaa gaccctgtgc atggagtata ttatgaccca 
//
last modified: Tue May 31 10:56 2022


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