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LOCUS AF388090 1260 bp RNA linear VRL 16-NOV-2005
DEFINITION HIV-1 isolate 503 from Uganda pol protein (pol) gene, partial cds
ACCESSION AF388090
VERSION AF388090.1 GI:19070957
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1260)
Show all sequences for reference 1
AUTHORS Eshleman,S.H., Becker-Pergola,G., Deseyve,M., Guay,L.A., Mracna,M.,
Fleming,T., Cunningham,S., Musoke,P., Mmiro,F. and Jackson,J.B.
TITLE Impact of human immunodeficiency virus type 1 (hiv-1) subtype on
women receiving single-dose nevirapine prophylaxis to prevent hiv-1
vertical transmission (hiv network for prevention trials 012 study)
JOURNAL J. Infect. Dis. 184 (7), 914-917 (2001)
PUBMED 11509999
REFERENCE 2 (bases 1 to 1260)
Show all sequences for reference 2
AUTHORS Becker-Pergola,G., Deseyve,M., Mracna,M., Guay,L.A., Cunningham,S.,
Musoke,P., Mmiro,F., Jackson,J.B. and Eshleman,S.H.
TITLE Direct Submission
JOURNAL Submitted (05-JUN-2001) Department of Pathology, Johns Hopkins
University, 720 Rutland Ave., Baltimore, MD 21205, USA
FEATURES Location/Qualifiers
source 1..1260
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="503"
/db_xref="taxon:11676"
/country="Uganda"
/note="from patient #503, non-transmitter, 6-8 weeks
post-partum mother subtype: A"
gene <1..>1260
/gene="pol"
CDS <1..>1260
/gene="pol"
/note="protease and 5'' reverse transcriptase region"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AAL84032.1"
/db_xref="GI:19070958"
/translation="PQITLWQRPIVTVRIEGQLKEALLDTGADDTVLEDINLPGKWKP
KMIGGIGGFIKVKQYDQILIEICGKRAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPIS
PIETIPVKLKPGMDGPKVKQWPLTEEKIKALTEICTDMEKEGKISRIGPENPYNTPVF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDESFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMIKILEPFRSQNPE
IVIYQYMDDLYVGSDLEIGQHRAKIEELRAHLLSWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVQPIQLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGTKALTXVV
TLTEEAELELAENREILKDPVHGVYYDP"
BASE COUNT 490 a 205 c 268 g 288 t 9 other
ORIGIN
1 cctcaaatca ctctttggca acgacccatt gtcacagtaa gaatagaggg acagctaaaa
61 gaagctctat tagatacagg agcagatgat acagtactag aagatataaa tttgccagga
121 aaatggaaac caaaaatgat agggggaatt ggaggattta tcaaggtaaa acagtatgat
181 cagatactta tagaaatttg tggaaaaagg gctataggta cagtactagt aggacctacm
241 cctgtcaaca taattggmag aaacatgcta acccagattg gttgtacttt aaattttcca
301 attagtccta ttgagactat accagtaaaa ttaaaaccag gaatggatgg tccaaaggtt
361 aaacaatggc cattgacaga agaaaaaata aaagcattaa cagaaatttg tacagayatg
421 gaaaaagaag gaaaaatttc aagaattggg cctgaaaatc catacaatac tccagtattc
481 gctataaaga aaaaagacag cactaaatgg agraaattag tagatttcag agagctyaat
541 aaaagaactc aggacttctg ggaagttcag ttaggaatac cgcatccagc aggtctaaaa
601 aagaagaaat cagtaacagt actggatgtg ggggacgcat atttttcagt tcctttagat
661 gaaagcttta gaaagtatac tgcattcacc atacctagta caaacaatga gacaccagga
721 atcaggtatc agtacaatgt gcttccacag ggatggaaag gatcaccggc aatattccag
781 agtagcatga taaaaatctt agagcccttc agatcacaaa atccagaaat agttatctat
841 caatacatgg atgatttgta tgtaggatct gatttagaaa tagggcagca tagagcaaaa
901 atagaggagt tgagagctca tctattgagc tgggggttta ctacaccaga caaaaagcat
961 cagaaagaac ctccatttct gtggatggga tatgaactac atcctgacaa atggacagtc
1021 cagcctatac arytgccaga aaaagacagc tggactgtca atgatataca aaaattagtg
1081 ggaaaactaa attgggcaag tcagatttat gcagggatta aagtaaarca actgtgtaaa
1141 ctcctcaggg gaaccaaagc actaacagak gtagtaacac tgactgagga agcagaatta
1201 gaattagcag agaacaggga gattctaaaa gaccctgtgc atggagtata ttatgaccca
//
last modified: Tue May 31 10:56 2022