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LOCUS AF388086 1260 bp RNA linear VRL 16-NOV-2005
DEFINITION HIV-1 isolate 479 from Uganda pol protein (pol) gene, partial cds
ACCESSION AF388086
VERSION AF388086.1 GI:19070949
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1260)
Show all sequences for reference 1
AUTHORS Eshleman,S.H., Becker-Pergola,G., Deseyve,M., Guay,L.A., Mracna,M.,
Fleming,T., Cunningham,S., Musoke,P., Mmiro,F. and Jackson,J.B.
TITLE Impact of human immunodeficiency virus type 1 (hiv-1) subtype on
women receiving single-dose nevirapine prophylaxis to prevent hiv-1
vertical transmission (hiv network for prevention trials 012 study)
JOURNAL J. Infect. Dis. 184 (7), 914-917 (2001)
PUBMED 11509999
REFERENCE 2 (bases 1 to 1260)
Show all sequences for reference 2
AUTHORS Becker-Pergola,G., Deseyve,M., Mracna,M., Guay,L.A., Cunningham,S.,
Musoke,P., Mmiro,F., Jackson,J.B. and Eshleman,S.H.
TITLE Direct Submission
JOURNAL Submitted (05-JUN-2001) Department of Pathology, Johns Hopkins
University, 720 Rutland Ave., Baltimore, MD 21205, USA
FEATURES Location/Qualifiers
source 1..1260
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="479"
/db_xref="taxon:11676"
/country="Uganda"
/note="recombinant subtype from patient #479,
non-transmitter, 6-8 weeks post-partum mother"
gene <1..>1260
/gene="pol"
CDS <1..>1260
/gene="pol"
/note="protease and 5'' reverse transcriptase region"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AAL84028.1"
/db_xref="GI:19070950"
/translation="PQITLWQRPLVTVRIGGQLKEALLDTGADDTVLEDINLPGKWKP
KMIGGIGGFIKVKQYDQIXIEICGKKAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPIS
PIETVPVKLKPGMDGPKIKQWPLTEEKIEALTEICNEMEKEGKISKIGPENPYNTPIF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDESFRKYTAFTIPSRNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPX
IVIYQYMDDLYVGSDLEIGQHRIKIEELREHLLRWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVQPINLPDKESWTVNDIQKLVGKLNWASQIYSGIKIRQLCKCIRGAKALTEVV
PLTEEAELELAENREILKEPVHGVYYDP"
BASE COUNT 495 a 195 c 267 g 296 t 7 other
ORIGIN
1 cctcaaatca ctctttggca acgacccctt gtcacagtaa gaataggagg acagctaaaa
61 gaagctctat tagatacagg agcagatgat acagtattag aagatataaa tttgccagga
121 aagtggaaac caaaaatgat agggggaatt ggaggtttta tcaaggtaaa acagtatgat
181 cagatastta tagaaatttg tggraaaaag gctataggta cagtattagt aggacctaca
241 cctgtcaaca taattggaag aaatatgttg actcagattg gttgtacttt aaattttcca
301 attagtccta ttgagactgt accagtaaaa ctaaagccag gaatggatgg cccaaagatt
361 aaacaatggc cattgacaga agaaaaaata gaagcattaa cagaaatttg taacgagatg
421 gaaaaggaag gtaaaatttc aaaaattggr cctgaaaatc catacaatac tccaatattt
481 gctataaaga aaaaggatag cactaaatgg agaaaattag tagattttag ggagctcaat
541 aaacgaactc aggacttctg ggaggttcaa ttaggaatac cgcatcccgc aggtttaaaa
601 aagaagaaat cagtaacagt gctagaygtg ggggacgcat atttttcagt tcctttagat
661 gaaagcttta gaaagtatac tgcattcacc atacctagta gaaacaatga gacaccagga
721 attagatatc agtacaatgt gcttccacaa ggatggaaag gatcaccggc aatcttccaa
781 agtagcatga caaaaatctt agaacctttt agaaaacaaa atccagraat agttatctat
841 caatacatgg atgatttgta tgtaggatct gatttagaaa tagggcagca tagaataaar
901 atagaggaat taagggaaca cctattgagg tggggattta ccacaccaga caaaaagcat
961 cagaaagaac ctccatttct ttggatgggt tatgaactcc atcctgataa atggacagta
1021 cagcctataa acttgccaga caaagaaagc tggactgtca atgatataca gaagttagtg
1081 ggaaaactaa attgggcaag ccagatttat tcaggaatta aaataagaca attatgcaaa
1141 tgcatyaggg gagccaaagc actgacagaa gtagtaccac tgacagaaga agcagaatta
1201 gaactggcgg aaaacaggga aattctaaaa gaaccagtac atggagtgta ttatgaccca
//
last modified: Tue May 31 10:56 2022