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LOCUS	    AF388086		    1260 bp    RNA     linear	VRL 16-NOV-2005
DEFINITION  HIV-1 isolate 479 from Uganda pol protein (pol) gene, partial cds
ACCESSION   AF388086
VERSION     AF388086.1 GI:19070949
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1260)
            Show all sequences for reference 1
  AUTHORS   Eshleman,S.H., Becker-Pergola,G., Deseyve,M., Guay,L.A., Mracna,M.,
	    Fleming,T., Cunningham,S., Musoke,P., Mmiro,F. and Jackson,J.B.
  TITLE     Impact of human immunodeficiency virus type 1 (hiv-1) subtype on
	    women receiving single-dose nevirapine prophylaxis to prevent hiv-1
	    vertical transmission (hiv network for prevention trials 012 study)
  JOURNAL   J. Infect. Dis. 184 (7), 914-917 (2001)
  PUBMED    11509999
REFERENCE   2 (bases 1 to 1260)
            Show all sequences for reference 2
  AUTHORS   Becker-Pergola,G., Deseyve,M., Mracna,M., Guay,L.A., Cunningham,S.,
	    Musoke,P., Mmiro,F., Jackson,J.B. and Eshleman,S.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2001) Department of Pathology, Johns Hopkins
	    University, 720 Rutland Ave., Baltimore, MD 21205, USA
FEATURES             Location/Qualifiers
     source	     1..1260
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="479"
		     /db_xref="taxon:11676"
		     /country="Uganda"
		     /note="recombinant subtype from patient #479,
		     non-transmitter, 6-8 weeks post-partum mother"
     gene	     <1..>1260
		     /gene="pol"
     CDS	     <1..>1260
		     /gene="pol"
		     /note="protease and 5'' reverse transcriptase region"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AAL84028.1"
		     /db_xref="GI:19070950"
		     /translation="PQITLWQRPLVTVRIGGQLKEALLDTGADDTVLEDINLPGKWKP
		     KMIGGIGGFIKVKQYDQIXIEICGKKAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPIS
		     PIETVPVKLKPGMDGPKIKQWPLTEEKIEALTEICNEMEKEGKISKIGPENPYNTPIF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDESFRKYTAFTIPSRNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPX
		     IVIYQYMDDLYVGSDLEIGQHRIKIEELREHLLRWGFTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPINLPDKESWTVNDIQKLVGKLNWASQIYSGIKIRQLCKCIRGAKALTEVV
		     PLTEEAELELAENREILKEPVHGVYYDP"
BASE COUNT	495 a	 195 c	  267 g    296 t      7 other
ORIGIN
       1 cctcaaatca ctctttggca acgacccctt gtcacagtaa gaataggagg acagctaaaa 
      61 gaagctctat tagatacagg agcagatgat acagtattag aagatataaa tttgccagga 
     121 aagtggaaac caaaaatgat agggggaatt ggaggtttta tcaaggtaaa acagtatgat 
     181 cagatastta tagaaatttg tggraaaaag gctataggta cagtattagt aggacctaca 
     241 cctgtcaaca taattggaag aaatatgttg actcagattg gttgtacttt aaattttcca 
     301 attagtccta ttgagactgt accagtaaaa ctaaagccag gaatggatgg cccaaagatt 
     361 aaacaatggc cattgacaga agaaaaaata gaagcattaa cagaaatttg taacgagatg 
     421 gaaaaggaag gtaaaatttc aaaaattggr cctgaaaatc catacaatac tccaatattt 
     481 gctataaaga aaaaggatag cactaaatgg agaaaattag tagattttag ggagctcaat 
     541 aaacgaactc aggacttctg ggaggttcaa ttaggaatac cgcatcccgc aggtttaaaa 
     601 aagaagaaat cagtaacagt gctagaygtg ggggacgcat atttttcagt tcctttagat 
     661 gaaagcttta gaaagtatac tgcattcacc atacctagta gaaacaatga gacaccagga 
     721 attagatatc agtacaatgt gcttccacaa ggatggaaag gatcaccggc aatcttccaa 
     781 agtagcatga caaaaatctt agaacctttt agaaaacaaa atccagraat agttatctat 
     841 caatacatgg atgatttgta tgtaggatct gatttagaaa tagggcagca tagaataaar 
     901 atagaggaat taagggaaca cctattgagg tggggattta ccacaccaga caaaaagcat 
     961 cagaaagaac ctccatttct ttggatgggt tatgaactcc atcctgataa atggacagta 
    1021 cagcctataa acttgccaga caaagaaagc tggactgtca atgatataca gaagttagtg 
    1081 ggaaaactaa attgggcaag ccagatttat tcaggaatta aaataagaca attatgcaaa 
    1141 tgcatyaggg gagccaaagc actgacagaa gtagtaccac tgacagaaga agcagaatta 
    1201 gaactggcgg aaaacaggga aattctaaaa gaaccagtac atggagtgta ttatgaccca 
//
last modified: Tue May 31 10:56 2022


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