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LOCUS	    AF366277		    1641 bp    DNA     linear	VRL 14-MAY-2001
DEFINITION  HIV-1 isolate 1-2 from USA pol polyprotein (pol) gene, partial cds
ACCESSION   AF366277
VERSION     AF366277.1 GI:14030507
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1641)
            Show all sequences for reference 1
  AUTHORS   Dykes,C., Fox,K., Lloyd,A., Chiulli,M., Morse,E. and Demeter,L.M.
  TITLE     Impact of clinical reverse transcriptase sequences on the
	    replication capacity of HIV-1 drug-resistant mutants.
  JOURNAL   Virology 285 (2), 193-203 (2001)
  PUBMED    11437654
REFERENCE   2 (bases 1 to 1641)
            Show all sequences for reference 2
  AUTHORS   Demeter,L.M., Dykes,C., Fox,K., Lloyd,A., Chiulli,M. and Morse,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-MAR-2001) Medicine-Infectious Diseases Unit,
	    University of Rochester Medical Center, Box 689, 601 Elmwood Ave.,
	    Rochester, NY 14642, USA
FEATURES             Location/Qualifiers
     source	     1..1641
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="1-2"
		     /db_xref="taxon:11676"
		     /country="USA"
		     /note="patient 1 treated with delavirdine"
     gene	     <1..>1641
		     /gene="pol"
     CDS	     <1..>1641
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol polyprotein"
		     /protein_id="AAK52927.1"
		     /db_xref="GI:14030508"
		     /translation="PGMDGPKVKQWPLTEEKIKALTEICTEMEKEGKISKIGPENPYN
		     TPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAY
		     FSVPLDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQDSMTKILEPFRK
		     QNPGIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLMWGFTTPDKKHQKEPPFLWMG
		     YELHLDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKAL
		     TEVIPLTREAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFK
		     NLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWEIWWTEY
		     WQATWIPEWEFVNTPPLVKLWYQLEKEPMIGAETFYVDGAANRETKLGKAGYVTDRGR
		     QKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVSQI
		     IEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSTGIRKVL"
BASE COUNT	666 a	 267 c	  354 g    354 t
ORIGIN
       1 cccgggatgg atggcccaaa agtgaaacaa tggccattga cagaagaaaa aataaaagca 
      61 ttaacagaaa tttgtacaga aatggaaaag gaagggaaaa tttcaaaaat tgggcctgaa 
     121 aatccatata atactccagt atttgccata aagaaaaaag acagtactaa atggagaaaa 
     181 ttagtagatt tcagagaact taataagaga actcaagact tctgggaagt tcaattagga 
     241 ataccacatc ccgcagggtt aaaaaagaaa aaatcagtaa cagtattgga tgtgggtgat 
     301 gcatattttt cagttccatt agataaagac tttaggaagt atactgcatt taccatacct 
     361 agtataaaca atgagacacc agggattaga taccaataca atgtgcttcc acagggatgg 
     421 aaaggatcac cagcaatatt ccaagatagc atgacaaaaa tcttagagcc ttttagaaaa 
     481 caaaatccag gcatagttat ctatcaatac atggatgatt tgtatgtagg atctgactta 
     541 gaaatagggc agcatagaac aaaaatagag gaactaagac aacatctgtt gatgtgggga 
     601 tttaccacac cagacaaaaa acatcagaaa gaacctccat tcctttggat ggggtatgaa 
     661 ctccatcttg ataaatggac agtacagcct atagtgctgc cagaaaaaga cagctggact 
     721 gtcaatgaca tacagaagtt agtgggaaaa ttgaattggg caagtcagat ttacccaggg 
     781 attaaagtaa ggcaattatg taaacttctt aggggaacca aggcactaac agaagtaata 
     841 ccactaacaa gagaagcaga gctagaactg gcagaaaaca gggaaattct aaaagaacca 
     901 gtacacggag tgtattatga cccatcaaaa gacttaatag cagaaataca gaagcagggg 
     961 cagggtcaat ggacatatca aatttatcaa gaaccattta aaaatctgaa aacaggaaaa 
    1021 tatgcaagaa tgaggggtgc ccacactaat gatgtaaaac aattaacaga ggcagtgcaa 
    1081 aaaataacca cagaaagcat agtaatatgg ggaaagactc ctaaatttaa actacccata 
    1141 caaaaagaaa catgggagat atggtggaca gagtattggc aagccacctg gattcctgag 
    1201 tgggaatttg tcaatacccc tcccttagtg aaattatggt accagttaga gaaagaaccc 
    1261 atgataggag cagagacttt ctatgtagat ggggcagcta acagggagac taaattagga 
    1321 aaagcaggat atgttactga cagagggaga caaaaagttg tctccctaac tgacacaaca 
    1381 aatcagaaga ctgagttaca agcaattcat ctagctctac aggattcagg attagaagta 
    1441 aacatagtga cagactcaca atatgcatta ggaatcattc aagcacaacc agataaaagt 
    1501 gaatcagagt tagtcagtca aataatagag cagttaataa aaaaggaaaa ggtctacctg 
    1561 gcatgggtac cagcgcataa aggaattgga ggaaatgaac aggtagataa attagtcagt 
    1621 actggaatca ggaaagtact a
//
last modified: Tue May 31 10:56 2022


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